miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8991 5' -58.6 NC_002512.2 + 188344 1.1 0.001871
Target:  5'- cGUGCAGGCCCGCAACCUCUACCAGGCc -3'
miRNA:   3'- -CACGUCCGGGCGUUGGAGAUGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 61456 0.84 0.10844
Target:  5'- cUGguGGCCCGgGACCUgUACCGGGUg -3'
miRNA:   3'- cACguCCGGGCgUUGGAgAUGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 43126 0.78 0.273116
Target:  5'- uUGUAGGCCCGCGggaACa--UGCCGGGCg -3'
miRNA:   3'- cACGUCCGGGCGU---UGgagAUGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 72530 0.77 0.285819
Target:  5'- -gGC-GGCCCG-GACCUCggcgGCCAGGCg -3'
miRNA:   3'- caCGuCCGGGCgUUGGAGa---UGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 129382 0.75 0.363976
Target:  5'- cGUGCGGGUgcucgacgaCCGCGGCCUCcccaagguCCGGGCc -3'
miRNA:   3'- -CACGUCCG---------GGCGUUGGAGau------GGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 156813 0.75 0.371774
Target:  5'- cGUGCAcucGGUCgGCAACCUgUGCgAGGCc -3'
miRNA:   3'- -CACGU---CCGGgCGUUGGAgAUGgUCCG- -5'
8991 5' -58.6 NC_002512.2 + 97743 0.75 0.395843
Target:  5'- cGUG-AGGUuccugauccgCCGCAACCggcgCUACCGGGCg -3'
miRNA:   3'- -CACgUCCG----------GGCGUUGGa---GAUGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 16119 0.74 0.438117
Target:  5'- -aGCcGGUugaCCGCGAUCaUCUGCCGGGCg -3'
miRNA:   3'- caCGuCCG---GGCGUUGG-AGAUGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 121023 0.74 0.445998
Target:  5'- cGUGCugaccucGGGCgagCGCGACCUCUggGCCGGGUa -3'
miRNA:   3'- -CACG-------UCCGg--GCGUUGGAGA--UGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 179334 0.73 0.464689
Target:  5'- cUGCAGcGCCgCGCGAaacugCUCUACCuGGCu -3'
miRNA:   3'- cACGUC-CGG-GCGUUg----GAGAUGGuCCG- -5'
8991 5' -58.6 NC_002512.2 + 157144 0.73 0.464689
Target:  5'- -gGCGGGCCCGgGGCgggCggcggGCCGGGCg -3'
miRNA:   3'- caCGUCCGGGCgUUGga-Ga----UGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 101706 0.73 0.464689
Target:  5'- -gGC-GGCCCGCucggcGACCUCguccCCGGGCu -3'
miRNA:   3'- caCGuCCGGGCG-----UUGGAGau--GGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 91485 0.73 0.464689
Target:  5'- uUGguGGCCCGCGG-CUCgaaGCgCAGGCu -3'
miRNA:   3'- cACguCCGGGCGUUgGAGa--UG-GUCCG- -5'
8991 5' -58.6 NC_002512.2 + 126974 0.73 0.473731
Target:  5'- ---gGGGCCCGUGGCCgUCgaccgcGCCAGGCg -3'
miRNA:   3'- cacgUCCGGGCGUUGG-AGa-----UGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 110013 0.73 0.477373
Target:  5'- -gGCAGGUgCGCGugagcaucgaggggaACCUgaACCAGGCg -3'
miRNA:   3'- caCGUCCGgGCGU---------------UGGAgaUGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 98651 0.73 0.477373
Target:  5'- cUGCAGGCcaCCGCGGCCUCcgACCGcgacgucgagcgccuGGCc -3'
miRNA:   3'- cACGUCCG--GGCGUUGGAGa-UGGU---------------CCG- -5'
8991 5' -58.6 NC_002512.2 + 147570 0.73 0.492076
Target:  5'- -gGC-GGCCCGCGGcCCUCUAcacCCAGcGCu -3'
miRNA:   3'- caCGuCCGGGCGUU-GGAGAU---GGUC-CG- -5'
8991 5' -58.6 NC_002512.2 + 220416 0.73 0.492076
Target:  5'- -cGCGGGCCCGCccGCCUacgGCCAGccGCc -3'
miRNA:   3'- caCGUCCGGGCGu-UGGAga-UGGUC--CG- -5'
8991 5' -58.6 NC_002512.2 + 7009 0.73 0.50137
Target:  5'- -cGCAGGagagCCGCAggGCCU-UGCCGGGCu -3'
miRNA:   3'- caCGUCCg---GGCGU--UGGAgAUGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 227553 0.73 0.50137
Target:  5'- -gGCGGGUCCGCGaccgagGCCUCcggACCGccGGCg -3'
miRNA:   3'- caCGUCCGGGCGU------UGGAGa--UGGU--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.