miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8991 5' -58.6 NC_002512.2 + 27960 0.7 0.627379
Target:  5'- --cCGGGCCCGUcGCCgaugggcgGCCGGGCg -3'
miRNA:   3'- cacGUCCGGGCGuUGGaga-----UGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 173821 0.72 0.539268
Target:  5'- cGUGCGGGUCUGC-ACCUCUugU-GGUu -3'
miRNA:   3'- -CACGUCCGGGCGuUGGAGAugGuCCG- -5'
8991 5' -58.6 NC_002512.2 + 116953 0.72 0.568317
Target:  5'- -cGCGGGCUCGCGcGCC---ACCGGGCc -3'
miRNA:   3'- caCGUCCGGGCGU-UGGagaUGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 115736 0.71 0.578092
Target:  5'- --cCGGGCCCGgGucguCCUCUGCC-GGCu -3'
miRNA:   3'- cacGUCCGGGCgUu---GGAGAUGGuCCG- -5'
8991 5' -58.6 NC_002512.2 + 95994 0.71 0.587902
Target:  5'- -gGCGuccGGCgCCGCGACC---GCCAGGCg -3'
miRNA:   3'- caCGU---CCG-GGCGUUGGagaUGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 18138 0.71 0.597742
Target:  5'- -cGCAGcGCCCGgGccGCgUCgcggGCCAGGCc -3'
miRNA:   3'- caCGUC-CGGGCgU--UGgAGa---UGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 7176 0.71 0.607606
Target:  5'- -aGCAGGCagguggcgaCGCAcuCCUCcccgUGCCGGGCg -3'
miRNA:   3'- caCGUCCGg--------GCGUu-GGAG----AUGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 114023 0.71 0.617487
Target:  5'- -gGCGGGCCCGCcucggcgaacGCCUCgagGCagGGGCc -3'
miRNA:   3'- caCGUCCGGGCGu---------UGGAGa--UGg-UCCG- -5'
8991 5' -58.6 NC_002512.2 + 67834 0.7 0.626389
Target:  5'- -gGCAGGCUcaggaugcacgCGCAuagaaucggcaccACCUCgccgucgGCCAGGCg -3'
miRNA:   3'- caCGUCCGG-----------GCGU-------------UGGAGa------UGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 124237 0.72 0.529695
Target:  5'- cUGC-GGCUCGCccuACCUCgGCCGGGUc -3'
miRNA:   3'- cACGuCCGGGCGu--UGGAGaUGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 70107 0.72 0.52398
Target:  5'- gGUGCAGGCCgggcgcgaagaccagCGUGACCgacuCCGGGCa -3'
miRNA:   3'- -CACGUCCGG---------------GCGUUGGagauGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 11216 0.72 0.517344
Target:  5'- -gGCGGGCCCGguGugcccggguauccgCCUCcguccGCCGGGCg -3'
miRNA:   3'- caCGUCCGGGCguU--------------GGAGa----UGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 43126 0.78 0.273116
Target:  5'- uUGUAGGCCCGCGggaACa--UGCCGGGCg -3'
miRNA:   3'- cACGUCCGGGCGU---UGgagAUGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 72530 0.77 0.285819
Target:  5'- -gGC-GGCCCG-GACCUCggcgGCCAGGCg -3'
miRNA:   3'- caCGuCCGGGCgUUGGAGa---UGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 129382 0.75 0.363976
Target:  5'- cGUGCGGGUgcucgacgaCCGCGGCCUCcccaagguCCGGGCc -3'
miRNA:   3'- -CACGUCCG---------GGCGUUGGAGau------GGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 16119 0.74 0.438117
Target:  5'- -aGCcGGUugaCCGCGAUCaUCUGCCGGGCg -3'
miRNA:   3'- caCGuCCG---GGCGUUGG-AGAUGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 91485 0.73 0.464689
Target:  5'- uUGguGGCCCGCGG-CUCgaaGCgCAGGCu -3'
miRNA:   3'- cACguCCGGGCGUUgGAGa--UG-GUCCG- -5'
8991 5' -58.6 NC_002512.2 + 126974 0.73 0.473731
Target:  5'- ---gGGGCCCGUGGCCgUCgaccgcGCCAGGCg -3'
miRNA:   3'- cacgUCCGGGCGUUGG-AGa-----UGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 98651 0.73 0.477373
Target:  5'- cUGCAGGCcaCCGCGGCCUCcgACCGcgacgucgagcgccuGGCc -3'
miRNA:   3'- cACGUCCG--GGCGUUGGAGa-UGGU---------------CCG- -5'
8991 5' -58.6 NC_002512.2 + 7009 0.73 0.50137
Target:  5'- -cGCAGGagagCCGCAggGCCU-UGCCGGGCu -3'
miRNA:   3'- caCGUCCg---GGCGU--UGGAgAUGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.