miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8992 3' -58.2 NC_002512.2 + 72796 0.66 0.903301
Target:  5'- cCGGGaCggGCCCGCCGuGGGCGccgGCGa -3'
miRNA:   3'- -GUCUaGuaCGGGUGGC-CCUGCca-CGU- -5'
8992 3' -58.2 NC_002512.2 + 7341 0.66 0.903301
Target:  5'- uCGGGUCGccguagccccgGCCCACCGcGACGGcgGCc -3'
miRNA:   3'- -GUCUAGUa----------CGGGUGGCcCUGCCa-CGu -5'
8992 3' -58.2 NC_002512.2 + 108546 0.66 0.903301
Target:  5'- gCGGAgaagGUCCGCCGGGccuuccgacCGGUGCu -3'
miRNA:   3'- -GUCUaguaCGGGUGGCCCu--------GCCACGu -5'
8992 3' -58.2 NC_002512.2 + 131949 0.66 0.903301
Target:  5'- gUAGAaccUCAUGCCCGgCGGaucGCGGUagGCGa -3'
miRNA:   3'- -GUCU---AGUACGGGUgGCCc--UGCCA--CGU- -5'
8992 3' -58.2 NC_002512.2 + 11284 0.66 0.903301
Target:  5'- --cAUgGUGCCCACagCGGGACGaGUuGCGa -3'
miRNA:   3'- gucUAgUACGGGUG--GCCCUGC-CA-CGU- -5'
8992 3' -58.2 NC_002512.2 + 194310 0.66 0.903301
Target:  5'- aCAGGUCAccuUCCucguggcCCGGGACGGUuGCGu -3'
miRNA:   3'- -GUCUAGUac-GGGu------GGCCCUGCCA-CGU- -5'
8992 3' -58.2 NC_002512.2 + 35041 0.66 0.902695
Target:  5'- -cGAUCGggGUCCGCaCGGGccgggacagcaccACGGUGCc -3'
miRNA:   3'- guCUAGUa-CGGGUG-GCCC-------------UGCCACGu -5'
8992 3' -58.2 NC_002512.2 + 153349 0.66 0.897143
Target:  5'- cCGGGUCGgcggGuCCCGCUGGGcUGGgcgGCGg -3'
miRNA:   3'- -GUCUAGUa---C-GGGUGGCCCuGCCa--CGU- -5'
8992 3' -58.2 NC_002512.2 + 119016 0.66 0.897143
Target:  5'- uGGAUCGUGCcgcugCCGCUGGcGACGGa--- -3'
miRNA:   3'- gUCUAGUACG-----GGUGGCC-CUGCCacgu -5'
8992 3' -58.2 NC_002512.2 + 219844 0.66 0.897143
Target:  5'- gGGGUCcgGCCCG--GGGGCGGaucGCGg -3'
miRNA:   3'- gUCUAGuaCGGGUggCCCUGCCa--CGU- -5'
8992 3' -58.2 NC_002512.2 + 123993 0.66 0.89077
Target:  5'- -cGAcggCGaGCCCACCGGGugGGa--- -3'
miRNA:   3'- guCUa--GUaCGGGUGGCCCugCCacgu -5'
8992 3' -58.2 NC_002512.2 + 119423 0.66 0.884187
Target:  5'- gGGAgCGUGgaCCGCgGGGACcuGGUGCGc -3'
miRNA:   3'- gUCUaGUACg-GGUGgCCCUG--CCACGU- -5'
8992 3' -58.2 NC_002512.2 + 75557 0.66 0.877397
Target:  5'- ----gCggGCUCGCCGGGGCGGgGCc -3'
miRNA:   3'- gucuaGuaCGGGUGGCCCUGCCaCGu -5'
8992 3' -58.2 NC_002512.2 + 133215 0.66 0.877397
Target:  5'- gGGAcgUCGUccGCCCAgCGaGGACGGgaggGCGg -3'
miRNA:   3'- gUCU--AGUA--CGGGUgGC-CCUGCCa---CGU- -5'
8992 3' -58.2 NC_002512.2 + 47678 0.67 0.870404
Target:  5'- -cGAaCGUGCuguuCCACCcgGGGGCGGUGUu -3'
miRNA:   3'- guCUaGUACG----GGUGG--CCCUGCCACGu -5'
8992 3' -58.2 NC_002512.2 + 83976 0.67 0.863213
Target:  5'- gCGGA---UGCCCgGCgCGGGGCGGUcGCGc -3'
miRNA:   3'- -GUCUaguACGGG-UG-GCCCUGCCA-CGU- -5'
8992 3' -58.2 NC_002512.2 + 17834 0.67 0.863213
Target:  5'- cCAGggUGUGCgCCAgcagcuccucCCGGGcGCGGUGCu -3'
miRNA:   3'- -GUCuaGUACG-GGU----------GGCCC-UGCCACGu -5'
8992 3' -58.2 NC_002512.2 + 171849 0.67 0.855829
Target:  5'- -cGGUCcgGCCgCgGCCGGGAgGGgGCGg -3'
miRNA:   3'- guCUAGuaCGG-G-UGGCCCUgCCaCGU- -5'
8992 3' -58.2 NC_002512.2 + 154435 0.67 0.848257
Target:  5'- gCGGAUCcuUGUCCggcGCCGucGACGGUGCGu -3'
miRNA:   3'- -GUCUAGu-ACGGG---UGGCc-CUGCCACGU- -5'
8992 3' -58.2 NC_002512.2 + 219402 0.67 0.843627
Target:  5'- -uGGUCG-GCCCGCCgcgacgcccacgcccGGGGCGGcgGCGg -3'
miRNA:   3'- guCUAGUaCGGGUGG---------------CCCUGCCa-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.