Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8992 | 3' | -58.2 | NC_002512.2 | + | 223025 | 0.72 | 0.57986 |
Target: 5'- aCGGGUCGUcGCCCAcuccggcgagguCCGGGA-GGUGCc -3' miRNA: 3'- -GUCUAGUA-CGGGU------------GGCCCUgCCACGu -5' |
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8992 | 3' | -58.2 | NC_002512.2 | + | 219844 | 0.66 | 0.897143 |
Target: 5'- gGGGUCcgGCCCG--GGGGCGGaucGCGg -3' miRNA: 3'- gUCUAGuaCGGGUggCCCUGCCa--CGU- -5' |
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8992 | 3' | -58.2 | NC_002512.2 | + | 219542 | 0.71 | 0.613199 |
Target: 5'- -cGG-CGUGCCCACCggacggucuucgccgGGGACGuGUGCGa -3' miRNA: 3'- guCUaGUACGGGUGG---------------CCCUGC-CACGU- -5' |
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8992 | 3' | -58.2 | NC_002512.2 | + | 219478 | 0.74 | 0.475794 |
Target: 5'- -cGGUCGUGCCC-CUGGGGCGG-GUc -3' miRNA: 3'- guCUAGUACGGGuGGCCCUGCCaCGu -5' |
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8992 | 3' | -58.2 | NC_002512.2 | + | 219402 | 0.67 | 0.843627 |
Target: 5'- -uGGUCG-GCCCGCCgcgacgcccacgcccGGGGCGGcgGCGg -3' miRNA: 3'- guCUAGUaCGGGUGG---------------CCCUGCCa-CGU- -5' |
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8992 | 3' | -58.2 | NC_002512.2 | + | 215441 | 0.68 | 0.824477 |
Target: 5'- aAGAUCGUcaGCCC-CCGGGAgCGGgucaucgccgGCGu -3' miRNA: 3'- gUCUAGUA--CGGGuGGCCCU-GCCa---------CGU- -5' |
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8992 | 3' | -58.2 | NC_002512.2 | + | 206056 | 0.7 | 0.66831 |
Target: 5'- uGGAUCAgguacagggUGgCCACCuGGGugccGCGGUGCAg -3' miRNA: 3'- gUCUAGU---------ACgGGUGG-CCC----UGCCACGU- -5' |
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8992 | 3' | -58.2 | NC_002512.2 | + | 194310 | 0.66 | 0.903301 |
Target: 5'- aCAGGUCAccuUCCucguggcCCGGGACGGUuGCGu -3' miRNA: 3'- -GUCUAGUac-GGGu------GGCCCUGCCA-CGU- -5' |
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8992 | 3' | -58.2 | NC_002512.2 | + | 190256 | 0.75 | 0.406251 |
Target: 5'- --cAUCAcGCCCAUCGGGGUGGUGCAc -3' miRNA: 3'- gucUAGUaCGGGUGGCCCUGCCACGU- -5' |
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8992 | 3' | -58.2 | NC_002512.2 | + | 190143 | 0.68 | 0.824477 |
Target: 5'- ---cUCGccugGCCCACCGGGugGGUc-- -3' miRNA: 3'- gucuAGUa---CGGGUGGCCCugCCAcgu -5' |
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8992 | 3' | -58.2 | NC_002512.2 | + | 188200 | 1.08 | 0.003208 |
Target: 5'- gCAGAUCAUGCCCACCGGGACGGUGCAg -3' miRNA: 3'- -GUCUAGUACGGGUGGCCCUGCCACGU- -5' |
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8992 | 3' | -58.2 | NC_002512.2 | + | 184108 | 0.68 | 0.799239 |
Target: 5'- gCGGGUgCAguucGCCCACgGGGGCGGguucGCc -3' miRNA: 3'- -GUCUA-GUa---CGGGUGgCCCUGCCa---CGu -5' |
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8992 | 3' | -58.2 | NC_002512.2 | + | 171849 | 0.67 | 0.855829 |
Target: 5'- -cGGUCcgGCCgCgGCCGGGAgGGgGCGg -3' miRNA: 3'- guCUAGuaCGG-G-UGGCCCUgCCaCGU- -5' |
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8992 | 3' | -58.2 | NC_002512.2 | + | 161856 | 0.68 | 0.781701 |
Target: 5'- aCGGcGUCGgcgGUCCucCCGGGuCGGUGCGu -3' miRNA: 3'- -GUC-UAGUa--CGGGu-GGCCCuGCCACGU- -5' |
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8992 | 3' | -58.2 | NC_002512.2 | + | 158680 | 0.8 | 0.218274 |
Target: 5'- cCGGAUCAUgGCCgGCCGGGACGGggagGUg -3' miRNA: 3'- -GUCUAGUA-CGGgUGGCCCUGCCa---CGu -5' |
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8992 | 3' | -58.2 | NC_002512.2 | + | 154435 | 0.67 | 0.848257 |
Target: 5'- gCGGAUCcuUGUCCggcGCCGucGACGGUGCGu -3' miRNA: 3'- -GUCUAGu-ACGGG---UGGCc-CUGCCACGU- -5' |
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8992 | 3' | -58.2 | NC_002512.2 | + | 153349 | 0.66 | 0.897143 |
Target: 5'- cCGGGUCGgcggGuCCCGCUGGGcUGGgcgGCGg -3' miRNA: 3'- -GUCUAGUa---C-GGGUGGCCCuGCCa--CGU- -5' |
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8992 | 3' | -58.2 | NC_002512.2 | + | 141197 | 0.75 | 0.431592 |
Target: 5'- cCGGAUCAUGCagcagcgcaGCCGGGGCGGguucggGCGg -3' miRNA: 3'- -GUCUAGUACGgg-------UGGCCCUGCCa-----CGU- -5' |
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8992 | 3' | -58.2 | NC_002512.2 | + | 138237 | 0.69 | 0.772742 |
Target: 5'- gAGGUCAccaCCuuCACCGGGugGGUGUu -3' miRNA: 3'- gUCUAGUac-GG--GUGGCCCugCCACGu -5' |
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8992 | 3' | -58.2 | NC_002512.2 | + | 133215 | 0.66 | 0.877397 |
Target: 5'- gGGAcgUCGUccGCCCAgCGaGGACGGgaggGCGg -3' miRNA: 3'- gUCU--AGUA--CGGGUgGC-CCUGCCa---CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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