miRNA display CGI


Results 61 - 80 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8992 5' -57.4 NC_002512.2 + 116963 0.67 0.872549
Target:  5'- --cGCGCCACcgggCCGCCGACGccccGUCcGGg -3'
miRNA:   3'- guaCGUGGUG----GGCGGCUGC----CAGuUCa -5'
8992 5' -57.4 NC_002512.2 + 209212 0.67 0.872549
Target:  5'- --gGCGCCugcgGCCCGUC-ACGGUCAAa- -3'
miRNA:   3'- guaCGUGG----UGGGCGGcUGCCAGUUca -5'
8992 5' -57.4 NC_002512.2 + 185474 0.67 0.872549
Target:  5'- cCGUGguCCugCCGCCG-CaGGUCAu-- -3'
miRNA:   3'- -GUACguGGugGGCGGCuG-CCAGUuca -5'
8992 5' -57.4 NC_002512.2 + 162220 0.67 0.872549
Target:  5'- --gGCACCACU---CGACGGUCGAGc -3'
miRNA:   3'- guaCGUGGUGGgcgGCUGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 146134 0.67 0.872549
Target:  5'- -cUGCACCugCCGCCGgaagaucggcauGCGGaUCGu-- -3'
miRNA:   3'- guACGUGGugGGCGGC------------UGCC-AGUuca -5'
8992 5' -57.4 NC_002512.2 + 139268 0.67 0.865397
Target:  5'- --cGCGCCGCCCGgCGcGCGGgggCGAa- -3'
miRNA:   3'- guaCGUGGUGGGCgGC-UGCCa--GUUca -5'
8992 5' -57.4 NC_002512.2 + 134149 0.67 0.865397
Target:  5'- --cGCGCguCCCgGCCGGCGGggaCGGGg -3'
miRNA:   3'- guaCGUGguGGG-CGGCUGCCa--GUUCa -5'
8992 5' -57.4 NC_002512.2 + 110525 0.67 0.865397
Target:  5'- uCGUcCACCAuCCCGCgGGCGGagAAGg -3'
miRNA:   3'- -GUAcGUGGU-GGGCGgCUGCCagUUCa -5'
8992 5' -57.4 NC_002512.2 + 119220 0.68 0.85805
Target:  5'- --aGCACCaggACCgGCUGcccGCGGUCGAGc -3'
miRNA:   3'- guaCGUGG---UGGgCGGC---UGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 206539 0.68 0.85805
Target:  5'- uCGUGCucGCCGCacucguacaCCGCCGGCGGccCGGGg -3'
miRNA:   3'- -GUACG--UGGUG---------GGCGGCUGCCa-GUUCa -5'
8992 5' -57.4 NC_002512.2 + 87774 0.68 0.85805
Target:  5'- --aGCuCCGgCCGCCGACgGGUC-GGUa -3'
miRNA:   3'- guaCGuGGUgGGCGGCUG-CCAGuUCA- -5'
8992 5' -57.4 NC_002512.2 + 2145 0.68 0.850512
Target:  5'- --cGuCGCCuccCCCGUcaCGGCGGUCGAGg -3'
miRNA:   3'- guaC-GUGGu--GGGCG--GCUGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 44403 0.68 0.850512
Target:  5'- gCGUGCGCCaugACCUG-CGGCGG-CAGGa -3'
miRNA:   3'- -GUACGUGG---UGGGCgGCUGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 80575 0.68 0.834889
Target:  5'- uCcgGCGgCgaGCCCGCgCGGCGGUCGAc- -3'
miRNA:   3'- -GuaCGUgG--UGGGCG-GCUGCCAGUUca -5'
8992 5' -57.4 NC_002512.2 + 136494 0.68 0.834889
Target:  5'- -cUGCAUCACCgGCCucuCGGUCAcGUc -3'
miRNA:   3'- guACGUGGUGGgCGGcu-GCCAGUuCA- -5'
8992 5' -57.4 NC_002512.2 + 121127 0.68 0.834889
Target:  5'- --cGUACCcgaACCCGUCGACGGcggcCGAGa -3'
miRNA:   3'- guaCGUGG---UGGGCGGCUGCCa---GUUCa -5'
8992 5' -57.4 NC_002512.2 + 105200 0.68 0.83168
Target:  5'- gCGUGCGCCcggaucccgagguCCCGuCUGGCGGUgAGGg -3'
miRNA:   3'- -GUACGUGGu------------GGGC-GGCUGCCAgUUCa -5'
8992 5' -57.4 NC_002512.2 + 105621 0.68 0.818578
Target:  5'- --gGCACCGgCCGUCGuCGGUCuccGAGa -3'
miRNA:   3'- guaCGUGGUgGGCGGCuGCCAG---UUCa -5'
8992 5' -57.4 NC_002512.2 + 125549 0.69 0.810183
Target:  5'- --aGcCGCCGCCCGaCCGACGGaaggacggUAGGUa -3'
miRNA:   3'- guaC-GUGGUGGGC-GGCUGCCa-------GUUCA- -5'
8992 5' -57.4 NC_002512.2 + 184624 0.69 0.801637
Target:  5'- --cGCgaGCC-CCCGCCGGCGGccgacggCGAGUc -3'
miRNA:   3'- guaCG--UGGuGGGCGGCUGCCa------GUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.