Results 41 - 60 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8992 | 5' | -57.4 | NC_002512.2 | + | 179296 | 0.67 | 0.892782 |
Target: 5'- --cGCACCGuccagUCCGCgGGCGG-CGAGg -3' miRNA: 3'- guaCGUGGU-----GGGCGgCUGCCaGUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 132445 | 0.67 | 0.892782 |
Target: 5'- -uUGCGCUcCCCGgCGGCGGgucCGGGg -3' miRNA: 3'- guACGUGGuGGGCgGCUGCCa--GUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 41880 | 0.67 | 0.892782 |
Target: 5'- aCAUGCAaaCGCgCGCCGACaGGUcCGAGc -3' miRNA: 3'- -GUACGUg-GUGgGCGGCUG-CCA-GUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 74415 | 0.67 | 0.892782 |
Target: 5'- gGUGCcgACgaACUCGCgguCGACGGUCAGGUc -3' miRNA: 3'- gUACG--UGg-UGGGCG---GCUGCCAGUUCA- -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 80738 | 0.67 | 0.886246 |
Target: 5'- --gGCACCGgcCCCG-CGGCGGUCccGGGUc -3' miRNA: 3'- guaCGUGGU--GGGCgGCUGCCAG--UUCA- -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 18519 | 0.67 | 0.886246 |
Target: 5'- --cGCAgCauGCCgCGCCgGGCGGUCAGGc -3' miRNA: 3'- guaCGUgG--UGG-GCGG-CUGCCAGUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 149245 | 0.67 | 0.886246 |
Target: 5'- cCcgGCGCCGCcgCCGCgGACGGccggaCGGGUa -3' miRNA: 3'- -GuaCGUGGUG--GGCGgCUGCCa----GUUCA- -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 117116 | 0.67 | 0.886246 |
Target: 5'- aCAgcgGCACgGggcCCCGUCGGCGGcguUCGAGUc -3' miRNA: 3'- -GUa--CGUGgU---GGGCGGCUGCC---AGUUCA- -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 124722 | 0.67 | 0.886246 |
Target: 5'- gCGUGCACCuguucCCCGCCGAcuCGG-CcuGUu -3' miRNA: 3'- -GUACGUGGu----GGGCGGCU--GCCaGuuCA- -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 97779 | 0.67 | 0.886246 |
Target: 5'- --gGCGCUGCCgGCCGAgaCGGaCGAGa -3' miRNA: 3'- guaCGUGGUGGgCGGCU--GCCaGUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 80463 | 0.67 | 0.886246 |
Target: 5'- --cGCGCCcgccCCCGCCG-CGGUCc--- -3' miRNA: 3'- guaCGUGGu---GGGCGGCuGCCAGuuca -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 97356 | 0.67 | 0.88558 |
Target: 5'- --gGCGCCGCCCGCggagcggggaccgCGGCGGcCGGa- -3' miRNA: 3'- guaCGUGGUGGGCG-------------GCUGCCaGUUca -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 130704 | 0.67 | 0.882223 |
Target: 5'- --gGCccGCCGCCCGCaucuacgagaucaagUGcCGGUCAAGUa -3' miRNA: 3'- guaCG--UGGUGGGCG---------------GCuGCCAGUUCA- -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 12060 | 0.67 | 0.8795 |
Target: 5'- -cUGCcgaACCGCCCGCCGucgACGaUCGGGa -3' miRNA: 3'- guACG---UGGUGGGCGGC---UGCcAGUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 8736 | 0.67 | 0.8795 |
Target: 5'- --cGCGCCcGCCCGUCGACGa-CGGGg -3' miRNA: 3'- guaCGUGG-UGGGCGGCUGCcaGUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 223300 | 0.67 | 0.8795 |
Target: 5'- aCAUgGUGCCGCCgGUCGAcaccgugaaCGGUCGGGa -3' miRNA: 3'- -GUA-CGUGGUGGgCGGCU---------GCCAGUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 125021 | 0.67 | 0.8795 |
Target: 5'- gUcgGCGCCGCCCGCUGcgcgaGGUCc--- -3' miRNA: 3'- -GuaCGUGGUGGGCGGCug---CCAGuuca -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 103081 | 0.67 | 0.8795 |
Target: 5'- --cGCACUGCCggucgcaGCCGAagcaGGUCGGGUu -3' miRNA: 3'- guaCGUGGUGGg------CGGCUg---CCAGUUCA- -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 101000 | 0.67 | 0.8795 |
Target: 5'- uGUGUcgcagacaGCUGCCCG-UGGCGGUCAGGa -3' miRNA: 3'- gUACG--------UGGUGGGCgGCUGCCAGUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 116963 | 0.67 | 0.872549 |
Target: 5'- --cGCGCCACcgggCCGCCGACGccccGUCcGGg -3' miRNA: 3'- guaCGUGGUG----GGCGGCUGC----CAGuUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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