miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8992 5' -57.4 NC_002512.2 + 140559 0.66 0.916771
Target:  5'- gGUGCACgaGCUCuCCGACcuGGUCGAGa -3'
miRNA:   3'- gUACGUGg-UGGGcGGCUG--CCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 132337 0.66 0.916771
Target:  5'- aGUGCACCAgcaCCGCCucGAUGaUCGAGa -3'
miRNA:   3'- gUACGUGGUg--GGCGG--CUGCcAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 60452 0.66 0.916771
Target:  5'- uGUGCGCCGCcaacauCCGCgCGACGGaCAc-- -3'
miRNA:   3'- gUACGUGGUG------GGCG-GCUGCCaGUuca -5'
8992 5' -57.4 NC_002512.2 + 92066 0.66 0.911102
Target:  5'- aCGUGCugCugUCGCaCGACGcaguucucGUCGAGc -3'
miRNA:   3'- -GUACGugGugGGCG-GCUGC--------CAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 183921 0.66 0.911102
Target:  5'- cCAUGaACCACaCCGCCG-CGGaUCAGa- -3'
miRNA:   3'- -GUACgUGGUG-GGCGGCuGCC-AGUUca -5'
8992 5' -57.4 NC_002512.2 + 54825 0.66 0.911102
Target:  5'- uGUGCACgucgCACCCGCgGAacCGGcCGAGc -3'
miRNA:   3'- gUACGUG----GUGGGCGgCU--GCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 127914 0.66 0.911102
Target:  5'- aUcgGcCACgaGCCCGCCGGCGGgcccgCGGGc -3'
miRNA:   3'- -GuaC-GUGg-UGGGCGGCUGCCa----GUUCa -5'
8992 5' -57.4 NC_002512.2 + 212350 0.66 0.909358
Target:  5'- aCGUGUccaagagcgagcugGCCGCCuaCGCCGACGccgacGUCGAGa -3'
miRNA:   3'- -GUACG--------------UGGUGG--GCGGCUGC-----CAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 12278 0.66 0.905213
Target:  5'- --gGCGCCGCCCgagucGCCGACGaccccCGAGg -3'
miRNA:   3'- guaCGUGGUGGG-----CGGCUGCca---GUUCa -5'
8992 5' -57.4 NC_002512.2 + 96068 0.66 0.905213
Target:  5'- --gGUACgACUCgGCCGucuCGGUCAGGUc -3'
miRNA:   3'- guaCGUGgUGGG-CGGCu--GCCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 86346 0.66 0.905213
Target:  5'- --cGCGCgG-CCGCCGACGGcgaCGAGg -3'
miRNA:   3'- guaCGUGgUgGGCGGCUGCCa--GUUCa -5'
8992 5' -57.4 NC_002512.2 + 220970 0.66 0.905213
Target:  5'- cCcgGCcgagGCCGCCCugGCCagGAgGGUCGAGUg -3'
miRNA:   3'- -GuaCG----UGGUGGG--CGG--CUgCCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 134591 0.66 0.905213
Target:  5'- uUcgGCGCCucgUCCGCCGACGGg----- -3'
miRNA:   3'- -GuaCGUGGu--GGGCGGCUGCCaguuca -5'
8992 5' -57.4 NC_002512.2 + 146930 0.67 0.899105
Target:  5'- cCGUGCGCCgcgACCUGCUGGCcGUgAAGc -3'
miRNA:   3'- -GUACGUGG---UGGGCGGCUGcCAgUUCa -5'
8992 5' -57.4 NC_002512.2 + 120887 0.67 0.899105
Target:  5'- --cGaCGCCGCCggCGCCGACGaG-CAGGUa -3'
miRNA:   3'- guaC-GUGGUGG--GCGGCUGC-CaGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 92155 0.67 0.899105
Target:  5'- gCGUGCaggaccugccgACCAaCCCGaCGGCGGUgGAGg -3'
miRNA:   3'- -GUACG-----------UGGU-GGGCgGCUGCCAgUUCa -5'
8992 5' -57.4 NC_002512.2 + 27742 0.67 0.898483
Target:  5'- ----gACCACCCGCCccgcggcGGCGGcCGAGa -3'
miRNA:   3'- guacgUGGUGGGCGG-------CUGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 126390 0.67 0.892782
Target:  5'- --cGCGCUGCCCGgCGAgCGGUCc--- -3'
miRNA:   3'- guaCGUGGUGGGCgGCU-GCCAGuuca -5'
8992 5' -57.4 NC_002512.2 + 74415 0.67 0.892782
Target:  5'- gGUGCcgACgaACUCGCgguCGACGGUCAGGUc -3'
miRNA:   3'- gUACG--UGg-UGGGCG---GCUGCCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 41880 0.67 0.892782
Target:  5'- aCAUGCAaaCGCgCGCCGACaGGUcCGAGc -3'
miRNA:   3'- -GUACGUg-GUGgGCGGCUG-CCA-GUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.