miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8992 5' -57.4 NC_002512.2 + 220573 0.71 0.680461
Target:  5'- cCGUGCGCCGCCCgauggaguGCCGGgaucCGGUCGu-- -3'
miRNA:   3'- -GUACGUGGUGGG--------CGGCU----GCCAGUuca -5'
8992 5' -57.4 NC_002512.2 + 109107 0.71 0.680461
Target:  5'- --cGcCGCC-CCCGCCGACGGccgcCGAGUc -3'
miRNA:   3'- guaC-GUGGuGGGCGGCUGCCa---GUUCA- -5'
8992 5' -57.4 NC_002512.2 + 227082 0.71 0.699961
Target:  5'- --cGCGCCGgguCCCGCCGGCcgccggccgGGUCGGGc -3'
miRNA:   3'- guaCGUGGU---GGGCGGCUG---------CCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 105065 0.71 0.699961
Target:  5'- uCcgGCACgCAgCCgaagaaGCCGGCGGUCGGGUc -3'
miRNA:   3'- -GuaCGUG-GUgGG------CGGCUGCCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 110802 0.71 0.709634
Target:  5'- --cGCACCuCCuCGCgCGAcCGGUCGAGg -3'
miRNA:   3'- guaCGUGGuGG-GCG-GCU-GCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 105541 0.7 0.719247
Target:  5'- -cUGCccgGCCGacucCCCGuuGACGGUCAGGc -3'
miRNA:   3'- guACG---UGGU----GGGCggCUGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 123882 0.7 0.738255
Target:  5'- --gGCGCCGCCCGUUcGCcGUCAAGUu -3'
miRNA:   3'- guaCGUGGUGGGCGGcUGcCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 37102 0.7 0.738255
Target:  5'- uGUGC-CCGCgCCGCaCGACGGUgacaUAGGUg -3'
miRNA:   3'- gUACGuGGUG-GGCG-GCUGCCA----GUUCA- -5'
8992 5' -57.4 NC_002512.2 + 47438 0.7 0.738255
Target:  5'- --aGCACCacGCCCGCaCGGCGGaggcCGAGg -3'
miRNA:   3'- guaCGUGG--UGGGCG-GCUGCCa---GUUCa -5'
8992 5' -57.4 NC_002512.2 + 200659 0.7 0.747634
Target:  5'- -cUGCGCgACCCgcgGCCGGCGuUCGGGUa -3'
miRNA:   3'- guACGUGgUGGG---CGGCUGCcAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 97319 0.7 0.747634
Target:  5'- --gGC-CgCGCCCGCCGG-GGUCGAGg -3'
miRNA:   3'- guaCGuG-GUGGGCGGCUgCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 199224 0.69 0.775172
Target:  5'- --cGCGCCGCCCGguagauCCGGCGcagcccgauGUCGAGUc -3'
miRNA:   3'- guaCGUGGUGGGC------GGCUGC---------CAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 184692 0.69 0.784123
Target:  5'- --cGCGCCGCCgGUCc-CGGUCGAGa -3'
miRNA:   3'- guaCGUGGUGGgCGGcuGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 11663 0.69 0.784123
Target:  5'- aUcgGCGCCgcgGCCCGCCG-CGGccCGAGg -3'
miRNA:   3'- -GuaCGUGG---UGGGCGGCuGCCa-GUUCa -5'
8992 5' -57.4 NC_002512.2 + 142107 0.69 0.784123
Target:  5'- cCcgGUACCgACCCGUCGGCGGcCGGa- -3'
miRNA:   3'- -GuaCGUGG-UGGGCGGCUGCCaGUUca -5'
8992 5' -57.4 NC_002512.2 + 6894 0.69 0.792948
Target:  5'- --cGUGCCGCUCcCCGGCaGGUCGAGg -3'
miRNA:   3'- guaCGUGGUGGGcGGCUG-CCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 1300 0.69 0.792948
Target:  5'- uCcgGCGCCugCCGCCGacacgaccGCGGUaAGGa -3'
miRNA:   3'- -GuaCGUGGugGGCGGC--------UGCCAgUUCa -5'
8992 5' -57.4 NC_002512.2 + 17740 0.69 0.792948
Target:  5'- --cGcCGCCaguGCCCGCCGACGcaCAGGUg -3'
miRNA:   3'- guaC-GUGG---UGGGCGGCUGCcaGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 184624 0.69 0.801637
Target:  5'- --cGCgaGCC-CCCGCCGGCGGccgacggCGAGUc -3'
miRNA:   3'- guaCG--UGGuGGGCGGCUGCCa------GUUCA- -5'
8992 5' -57.4 NC_002512.2 + 125549 0.69 0.810183
Target:  5'- --aGcCGCCGCCCGaCCGACGGaaggacggUAGGUa -3'
miRNA:   3'- guaC-GUGGUGGGC-GGCUGCCa-------GUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.