miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8992 5' -57.4 NC_002512.2 + 188235 0.91 0.051984
Target:  5'- uCAUGC-CCaACCCGCCGACGGUCAAGUu -3'
miRNA:   3'- -GUACGuGG-UGGGCGGCUGCCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 55810 0.79 0.301939
Target:  5'- --aGCGCCAUCCGCgCGGCGGUgAAGa -3'
miRNA:   3'- guaCGUGGUGGGCG-GCUGCCAgUUCa -5'
8992 5' -57.4 NC_002512.2 + 67861 0.75 0.450524
Target:  5'- aUcgGCACCACCuCGCCGuCGGcCAGGc -3'
miRNA:   3'- -GuaCGUGGUGG-GCGGCuGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 227923 0.75 0.477452
Target:  5'- --cGCGCCGCCuccgaCGCCGGCGGaCGAGg -3'
miRNA:   3'- guaCGUGGUGG-----GCGGCUGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 162011 0.74 0.505151
Target:  5'- gAUGCggACCGCCUgGCCGACGG-CGAGg -3'
miRNA:   3'- gUACG--UGGUGGG-CGGCUGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 79382 0.74 0.533519
Target:  5'- -cUGCACCccgACCCGCgGGCGGaCGAGa -3'
miRNA:   3'- guACGUGG---UGGGCGgCUGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 128873 0.74 0.543103
Target:  5'- gGUGCugCGCCUGCUGAgGGaCGAGa -3'
miRNA:   3'- gUACGugGUGGGCGGCUgCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 138000 0.73 0.551777
Target:  5'- cCGUGCGCCGCgCCGCCGcccgcgccggacgGCGGccUCGGGg -3'
miRNA:   3'- -GUACGUGGUG-GGCGGC-------------UGCC--AGUUCa -5'
8992 5' -57.4 NC_002512.2 + 103231 0.73 0.552743
Target:  5'- gCGU-CGCCGCCCGUCGACGGccgcggCGAGg -3'
miRNA:   3'- -GUAcGUGGUGGGCGGCUGCCa-----GUUCa -5'
8992 5' -57.4 NC_002512.2 + 128121 0.73 0.552743
Target:  5'- --gGCGCCGuCUCGCCGAaGGUCAGGc -3'
miRNA:   3'- guaCGUGGU-GGGCGGCUgCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 121959 0.73 0.559522
Target:  5'- -cUGCAgcugacccggguccCCGCCCGCCGGCGGgaCGAGa -3'
miRNA:   3'- guACGU--------------GGUGGGCGGCUGCCa-GUUCa -5'
8992 5' -57.4 NC_002512.2 + 206874 0.73 0.562434
Target:  5'- --gGCGCCgaGCUCGCCGACGGgUAGGUc -3'
miRNA:   3'- guaCGUGG--UGGGCGGCUGCCaGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 108667 0.73 0.581945
Target:  5'- aCAUGUACUcCCCGCCGACGa-CGAGg -3'
miRNA:   3'- -GUACGUGGuGGGCGGCUGCcaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 98144 0.73 0.581945
Target:  5'- --cGCgGCCGCCCGCCccGGCGGUCGccgcGGUc -3'
miRNA:   3'- guaCG-UGGUGGGCGG--CUGCCAGU----UCA- -5'
8992 5' -57.4 NC_002512.2 + 28421 0.73 0.591754
Target:  5'- -cUGCACC-CCgGCCGACGGggaccaccUCGAGg -3'
miRNA:   3'- guACGUGGuGGgCGGCUGCC--------AGUUCa -5'
8992 5' -57.4 NC_002512.2 + 108425 0.72 0.611448
Target:  5'- -cUGCGCCGCCCgggGCCGGgGGcCGGGg -3'
miRNA:   3'- guACGUGGUGGG---CGGCUgCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 172039 0.72 0.6312
Target:  5'- gCAUGCGCCccACCCGCCG--GGUCAu-- -3'
miRNA:   3'- -GUACGUGG--UGGGCGGCugCCAGUuca -5'
8992 5' -57.4 NC_002512.2 + 216264 0.71 0.658843
Target:  5'- gGUGCGCCGCCCGCaccgccagcuCGGUCGucgAGUu -3'
miRNA:   3'- gUACGUGGUGGGCGgcu-------GCCAGU---UCA- -5'
8992 5' -57.4 NC_002512.2 + 82272 0.71 0.660814
Target:  5'- --cGuCGCC-CCCGUCGAgGGUCGGGUc -3'
miRNA:   3'- guaC-GUGGuGGGCGGCUgCCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 23329 0.71 0.660814
Target:  5'- --gGCGCCccgGgCCGCCGGCGGUguaCGAGUg -3'
miRNA:   3'- guaCGUGG---UgGGCGGCUGCCA---GUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.