Results 1 - 20 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8992 | 5' | -57.4 | NC_002512.2 | + | 12278 | 0.66 | 0.905213 |
Target: 5'- --gGCGCCGCCCgagucGCCGACGaccccCGAGg -3' miRNA: 3'- guaCGUGGUGGG-----CGGCUGCca---GUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 79954 | 0.66 | 0.922217 |
Target: 5'- --gGguCCGCCUGCCGucggaaGCGGUCGGc- -3' miRNA: 3'- guaCguGGUGGGCGGC------UGCCAGUUca -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 123158 | 0.66 | 0.927442 |
Target: 5'- --gGCGCCGCgaucgCCGCCGA-GGcCGAGg -3' miRNA: 3'- guaCGUGGUG-----GGCGGCUgCCaGUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 132337 | 0.66 | 0.916771 |
Target: 5'- aGUGCACCAgcaCCGCCucGAUGaUCGAGa -3' miRNA: 3'- gUACGUGGUg--GGCGG--CUGCcAGUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 79481 | 0.66 | 0.916771 |
Target: 5'- --cGCG-CGCCCGUgGGCGGuUCGGGg -3' miRNA: 3'- guaCGUgGUGGGCGgCUGCC-AGUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 33134 | 0.66 | 0.922217 |
Target: 5'- --aGCAgUACaCGCCGcCGGUCGAGc -3' miRNA: 3'- guaCGUgGUGgGCGGCuGCCAGUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 184368 | 0.66 | 0.932443 |
Target: 5'- --cGcCGCCGCCCGCCG-CGGg----- -3' miRNA: 3'- guaC-GUGGUGGGCGGCuGCCaguuca -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 86346 | 0.66 | 0.905213 |
Target: 5'- --cGCGCgG-CCGCCGACGGcgaCGAGg -3' miRNA: 3'- guaCGUGgUgGGCGGCUGCCa--GUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 96068 | 0.66 | 0.905213 |
Target: 5'- --gGUACgACUCgGCCGucuCGGUCAGGUc -3' miRNA: 3'- guaCGUGgUGGG-CGGCu--GCCAGUUCA- -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 27770 | 0.66 | 0.927442 |
Target: 5'- aCcgGCGCCACCaGCUGacgaggacGCGGUCGGa- -3' miRNA: 3'- -GuaCGUGGUGGgCGGC--------UGCCAGUUca -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 60452 | 0.66 | 0.916771 |
Target: 5'- uGUGCGCCGCcaacauCCGCgCGACGGaCAc-- -3' miRNA: 3'- gUACGUGGUG------GGCG-GCUGCCaGUuca -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 183921 | 0.66 | 0.911102 |
Target: 5'- cCAUGaACCACaCCGCCG-CGGaUCAGa- -3' miRNA: 3'- -GUACgUGGUG-GGCGGCuGCC-AGUUca -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 54825 | 0.66 | 0.911102 |
Target: 5'- uGUGCACgucgCACCCGCgGAacCGGcCGAGc -3' miRNA: 3'- gUACGUG----GUGGGCGgCU--GCCaGUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 45492 | 0.66 | 0.922217 |
Target: 5'- --aGCGCCcCCCGgCGGCGGcCAc-- -3' miRNA: 3'- guaCGUGGuGGGCgGCUGCCaGUuca -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 4650 | 0.66 | 0.932443 |
Target: 5'- --aGCACgGgagcggaggcCCCGCCGGCGcGUCGAa- -3' miRNA: 3'- guaCGUGgU----------GGGCGGCUGC-CAGUUca -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 115547 | 0.66 | 0.932443 |
Target: 5'- --aGUuaagUCGCCCGCCGcGCGcGUCAAGa -3' miRNA: 3'- guaCGu---GGUGGGCGGC-UGC-CAGUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 140559 | 0.66 | 0.916771 |
Target: 5'- gGUGCACgaGCUCuCCGACcuGGUCGAGa -3' miRNA: 3'- gUACGUGg-UGGGcGGCUG--CCAGUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 73283 | 0.66 | 0.927442 |
Target: 5'- --aGCGCCuCCuCGUacaUGGCGGUCAGGc -3' miRNA: 3'- guaCGUGGuGG-GCG---GCUGCCAGUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 99898 | 0.66 | 0.922217 |
Target: 5'- --gGCGCgGCCCGUCGAgGGcgcCGGGg -3' miRNA: 3'- guaCGUGgUGGGCGGCUgCCa--GUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 92066 | 0.66 | 0.911102 |
Target: 5'- aCGUGCugCugUCGCaCGACGcaguucucGUCGAGc -3' miRNA: 3'- -GUACGugGugGGCG-GCUGC--------CAGUUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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