miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8992 5' -57.4 NC_002512.2 + 79481 0.66 0.916771
Target:  5'- --cGCG-CGCCCGUgGGCGGuUCGGGg -3'
miRNA:   3'- guaCGUgGUGGGCGgCUGCC-AGUUCa -5'
8992 5' -57.4 NC_002512.2 + 60452 0.66 0.916771
Target:  5'- uGUGCGCCGCcaacauCCGCgCGACGGaCAc-- -3'
miRNA:   3'- gUACGUGGUG------GGCG-GCUGCCaGUuca -5'
8992 5' -57.4 NC_002512.2 + 183921 0.66 0.911102
Target:  5'- cCAUGaACCACaCCGCCG-CGGaUCAGa- -3'
miRNA:   3'- -GUACgUGGUG-GGCGGCuGCC-AGUUca -5'
8992 5' -57.4 NC_002512.2 + 92066 0.66 0.911102
Target:  5'- aCGUGCugCugUCGCaCGACGcaguucucGUCGAGc -3'
miRNA:   3'- -GUACGugGugGGCG-GCUGC--------CAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 54825 0.66 0.911102
Target:  5'- uGUGCACgucgCACCCGCgGAacCGGcCGAGc -3'
miRNA:   3'- gUACGUG----GUGGGCGgCU--GCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 96068 0.66 0.905213
Target:  5'- --gGUACgACUCgGCCGucuCGGUCAGGUc -3'
miRNA:   3'- guaCGUGgUGGG-CGGCu--GCCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 33134 0.66 0.922217
Target:  5'- --aGCAgUACaCGCCGcCGGUCGAGc -3'
miRNA:   3'- guaCGUgGUGgGCGGCuGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 79954 0.66 0.922217
Target:  5'- --gGguCCGCCUGCCGucggaaGCGGUCGGc- -3'
miRNA:   3'- guaCguGGUGGGCGGC------UGCCAGUUca -5'
8992 5' -57.4 NC_002512.2 + 99898 0.66 0.922217
Target:  5'- --gGCGCgGCCCGUCGAgGGcgcCGGGg -3'
miRNA:   3'- guaCGUGgUGGGCGGCUgCCa--GUUCa -5'
8992 5' -57.4 NC_002512.2 + 73283 0.66 0.927442
Target:  5'- --aGCGCCuCCuCGUacaUGGCGGUCAGGc -3'
miRNA:   3'- guaCGUGGuGG-GCG---GCUGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 4650 0.66 0.932443
Target:  5'- --aGCACgGgagcggaggcCCCGCCGGCGcGUCGAa- -3'
miRNA:   3'- guaCGUGgU----------GGGCGGCUGC-CAGUUca -5'
8992 5' -57.4 NC_002512.2 + 184368 0.66 0.932443
Target:  5'- --cGcCGCCGCCCGCCG-CGGg----- -3'
miRNA:   3'- guaC-GUGGUGGGCGGCuGCCaguuca -5'
8992 5' -57.4 NC_002512.2 + 132337 0.66 0.916771
Target:  5'- aGUGCACCAgcaCCGCCucGAUGaUCGAGa -3'
miRNA:   3'- gUACGUGGUg--GGCGG--CUGCcAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 12060 0.67 0.8795
Target:  5'- -cUGCcgaACCGCCCGCCGucgACGaUCGGGa -3'
miRNA:   3'- guACG---UGGUGGGCGGC---UGCcAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 8736 0.67 0.8795
Target:  5'- --cGCGCCcGCCCGUCGACGa-CGGGg -3'
miRNA:   3'- guaCGUGG-UGGGCGGCUGCcaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 116963 0.67 0.872549
Target:  5'- --cGCGCCACcgggCCGCCGACGccccGUCcGGg -3'
miRNA:   3'- guaCGUGGUG----GGCGGCUGC----CAGuUCa -5'
8992 5' -57.4 NC_002512.2 + 70303 0.67 0.872549
Target:  5'- -cUGCGCCACCaaaGCCGGguacagGGUCcGGUa -3'
miRNA:   3'- guACGUGGUGGg--CGGCUg-----CCAGuUCA- -5'
8992 5' -57.4 NC_002512.2 + 139268 0.67 0.865397
Target:  5'- --cGCGCCGCCCGgCGcGCGGgggCGAa- -3'
miRNA:   3'- guaCGUGGUGGGCgGC-UGCCa--GUUca -5'
8992 5' -57.4 NC_002512.2 + 134149 0.67 0.865397
Target:  5'- --cGCGCguCCCgGCCGGCGGggaCGGGg -3'
miRNA:   3'- guaCGUGguGGG-CGGCUGCCa--GUUCa -5'
8992 5' -57.4 NC_002512.2 + 130704 0.67 0.882223
Target:  5'- --gGCccGCCGCCCGCaucuacgagaucaagUGcCGGUCAAGUa -3'
miRNA:   3'- guaCG--UGGUGGGCG---------------GCuGCCAGUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.