miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8992 5' -57.4 NC_002512.2 + 47438 0.7 0.738255
Target:  5'- --aGCACCacGCCCGCaCGGCGGaggcCGAGg -3'
miRNA:   3'- guaCGUGG--UGGGCG-GCUGCCa---GUUCa -5'
8992 5' -57.4 NC_002512.2 + 54825 0.66 0.911102
Target:  5'- uGUGCACgucgCACCCGCgGAacCGGcCGAGc -3'
miRNA:   3'- gUACGUG----GUGGGCGgCU--GCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 55810 0.79 0.301939
Target:  5'- --aGCGCCAUCCGCgCGGCGGUgAAGa -3'
miRNA:   3'- guaCGUGGUGGGCG-GCUGCCAgUUCa -5'
8992 5' -57.4 NC_002512.2 + 60452 0.66 0.916771
Target:  5'- uGUGCGCCGCcaacauCCGCgCGACGGaCAc-- -3'
miRNA:   3'- gUACGUGGUG------GGCG-GCUGCCaGUuca -5'
8992 5' -57.4 NC_002512.2 + 67861 0.75 0.450524
Target:  5'- aUcgGCACCACCuCGCCGuCGGcCAGGc -3'
miRNA:   3'- -GuaCGUGGUGG-GCGGCuGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 70303 0.67 0.872549
Target:  5'- -cUGCGCCACCaaaGCCGGguacagGGUCcGGUa -3'
miRNA:   3'- guACGUGGUGGg--CGGCUg-----CCAGuUCA- -5'
8992 5' -57.4 NC_002512.2 + 73283 0.66 0.927442
Target:  5'- --aGCGCCuCCuCGUacaUGGCGGUCAGGc -3'
miRNA:   3'- guaCGUGGuGG-GCG---GCUGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 74415 0.67 0.892782
Target:  5'- gGUGCcgACgaACUCGCgguCGACGGUCAGGUc -3'
miRNA:   3'- gUACG--UGg-UGGGCG---GCUGCCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 77075 0.67 0.892782
Target:  5'- -cUGCucGCCGCCCGCCGucgccGCGGaccucCGAGa -3'
miRNA:   3'- guACG--UGGUGGGCGGC-----UGCCa----GUUCa -5'
8992 5' -57.4 NC_002512.2 + 79382 0.74 0.533519
Target:  5'- -cUGCACCccgACCCGCgGGCGGaCGAGa -3'
miRNA:   3'- guACGUGG---UGGGCGgCUGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 79481 0.66 0.916771
Target:  5'- --cGCG-CGCCCGUgGGCGGuUCGGGg -3'
miRNA:   3'- guaCGUgGUGGGCGgCUGCC-AGUUCa -5'
8992 5' -57.4 NC_002512.2 + 79954 0.66 0.922217
Target:  5'- --gGguCCGCCUGCCGucggaaGCGGUCGGc- -3'
miRNA:   3'- guaCguGGUGGGCGGC------UGCCAGUUca -5'
8992 5' -57.4 NC_002512.2 + 80463 0.67 0.886246
Target:  5'- --cGCGCCcgccCCCGCCG-CGGUCc--- -3'
miRNA:   3'- guaCGUGGu---GGGCGGCuGCCAGuuca -5'
8992 5' -57.4 NC_002512.2 + 80575 0.68 0.834889
Target:  5'- uCcgGCGgCgaGCCCGCgCGGCGGUCGAc- -3'
miRNA:   3'- -GuaCGUgG--UGGGCG-GCUGCCAGUUca -5'
8992 5' -57.4 NC_002512.2 + 80738 0.67 0.886246
Target:  5'- --gGCACCGgcCCCG-CGGCGGUCccGGGUc -3'
miRNA:   3'- guaCGUGGU--GGGCgGCUGCCAG--UUCA- -5'
8992 5' -57.4 NC_002512.2 + 82272 0.71 0.660814
Target:  5'- --cGuCGCC-CCCGUCGAgGGUCGGGUc -3'
miRNA:   3'- guaC-GUGGuGGGCGGCUgCCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 86346 0.66 0.905213
Target:  5'- --cGCGCgG-CCGCCGACGGcgaCGAGg -3'
miRNA:   3'- guaCGUGgUgGGCGGCUGCCa--GUUCa -5'
8992 5' -57.4 NC_002512.2 + 87774 0.68 0.85805
Target:  5'- --aGCuCCGgCCGCCGACgGGUC-GGUa -3'
miRNA:   3'- guaCGuGGUgGGCGGCUG-CCAGuUCA- -5'
8992 5' -57.4 NC_002512.2 + 92066 0.66 0.911102
Target:  5'- aCGUGCugCugUCGCaCGACGcaguucucGUCGAGc -3'
miRNA:   3'- -GUACGugGugGGCG-GCUGC--------CAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 92155 0.67 0.899105
Target:  5'- gCGUGCaggaccugccgACCAaCCCGaCGGCGGUgGAGg -3'
miRNA:   3'- -GUACG-----------UGGU-GGGCgGCUGCCAgUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.