miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8992 5' -57.4 NC_002512.2 + 1300 0.69 0.792948
Target:  5'- uCcgGCGCCugCCGCCGacacgaccGCGGUaAGGa -3'
miRNA:   3'- -GuaCGUGGugGGCGGC--------UGCCAgUUCa -5'
8992 5' -57.4 NC_002512.2 + 2145 0.68 0.850512
Target:  5'- --cGuCGCCuccCCCGUcaCGGCGGUCGAGg -3'
miRNA:   3'- guaC-GUGGu--GGGCG--GCUGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 4650 0.66 0.932443
Target:  5'- --aGCACgGgagcggaggcCCCGCCGGCGcGUCGAa- -3'
miRNA:   3'- guaCGUGgU----------GGGCGGCUGC-CAGUUca -5'
8992 5' -57.4 NC_002512.2 + 6894 0.69 0.792948
Target:  5'- --cGUGCCGCUCcCCGGCaGGUCGAGg -3'
miRNA:   3'- guaCGUGGUGGGcGGCUG-CCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 8736 0.67 0.8795
Target:  5'- --cGCGCCcGCCCGUCGACGa-CGGGg -3'
miRNA:   3'- guaCGUGG-UGGGCGGCUGCcaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 11663 0.69 0.784123
Target:  5'- aUcgGCGCCgcgGCCCGCCG-CGGccCGAGg -3'
miRNA:   3'- -GuaCGUGG---UGGGCGGCuGCCa-GUUCa -5'
8992 5' -57.4 NC_002512.2 + 12060 0.67 0.8795
Target:  5'- -cUGCcgaACCGCCCGCCGucgACGaUCGGGa -3'
miRNA:   3'- guACG---UGGUGGGCGGC---UGCcAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 12278 0.66 0.905213
Target:  5'- --gGCGCCGCCCgagucGCCGACGaccccCGAGg -3'
miRNA:   3'- guaCGUGGUGGG-----CGGCUGCca---GUUCa -5'
8992 5' -57.4 NC_002512.2 + 17740 0.69 0.792948
Target:  5'- --cGcCGCCaguGCCCGCCGACGcaCAGGUg -3'
miRNA:   3'- guaC-GUGG---UGGGCGGCUGCcaGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 18519 0.67 0.886246
Target:  5'- --cGCAgCauGCCgCGCCgGGCGGUCAGGc -3'
miRNA:   3'- guaCGUgG--UGG-GCGG-CUGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 23329 0.71 0.660814
Target:  5'- --gGCGCCccgGgCCGCCGGCGGUguaCGAGUg -3'
miRNA:   3'- guaCGUGG---UgGGCGGCUGCCA---GUUCA- -5'
8992 5' -57.4 NC_002512.2 + 27742 0.67 0.898483
Target:  5'- ----gACCACCCGCCccgcggcGGCGGcCGAGa -3'
miRNA:   3'- guacgUGGUGGGCGG-------CUGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 27770 0.66 0.927442
Target:  5'- aCcgGCGCCACCaGCUGacgaggacGCGGUCGGa- -3'
miRNA:   3'- -GuaCGUGGUGGgCGGC--------UGCCAGUUca -5'
8992 5' -57.4 NC_002512.2 + 28421 0.73 0.591754
Target:  5'- -cUGCACC-CCgGCCGACGGggaccaccUCGAGg -3'
miRNA:   3'- guACGUGGuGGgCGGCUGCC--------AGUUCa -5'
8992 5' -57.4 NC_002512.2 + 33134 0.66 0.922217
Target:  5'- --aGCAgUACaCGCCGcCGGUCGAGc -3'
miRNA:   3'- guaCGUgGUGgGCGGCuGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 33206 0.67 0.892782
Target:  5'- gGUGcCGCUcguCCCGCCGGCaGUCAGa- -3'
miRNA:   3'- gUAC-GUGGu--GGGCGGCUGcCAGUUca -5'
8992 5' -57.4 NC_002512.2 + 37102 0.7 0.738255
Target:  5'- uGUGC-CCGCgCCGCaCGACGGUgacaUAGGUg -3'
miRNA:   3'- gUACGuGGUG-GGCG-GCUGCCA----GUUCA- -5'
8992 5' -57.4 NC_002512.2 + 41880 0.67 0.892782
Target:  5'- aCAUGCAaaCGCgCGCCGACaGGUcCGAGc -3'
miRNA:   3'- -GUACGUg-GUGgGCGGCUG-CCA-GUUCa -5'
8992 5' -57.4 NC_002512.2 + 44403 0.68 0.850512
Target:  5'- gCGUGCGCCaugACCUG-CGGCGG-CAGGa -3'
miRNA:   3'- -GUACGUGG---UGGGCgGCUGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 45492 0.66 0.922217
Target:  5'- --aGCGCCcCCCGgCGGCGGcCAc-- -3'
miRNA:   3'- guaCGUGGuGGGCgGCUGCCaGUuca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.