miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8992 5' -57.4 NC_002512.2 + 227923 0.75 0.477452
Target:  5'- --cGCGCCGCCuccgaCGCCGGCGGaCGAGg -3'
miRNA:   3'- guaCGUGGUGG-----GCGGCUGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 227082 0.71 0.699961
Target:  5'- --cGCGCCGgguCCCGCCGGCcgccggccgGGUCGGGc -3'
miRNA:   3'- guaCGUGGU---GGGCGGCUG---------CCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 225791 0.66 0.916771
Target:  5'- -cUGCGCCggccgGgCCGCgGGCGGcCGGGUg -3'
miRNA:   3'- guACGUGG-----UgGGCGgCUGCCaGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 223300 0.67 0.8795
Target:  5'- aCAUgGUGCCGCCgGUCGAcaccgugaaCGGUCGGGa -3'
miRNA:   3'- -GUA-CGUGGUGGgCGGCU---------GCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 222575 0.66 0.916771
Target:  5'- --cGcCGCgGCCCGCCGucGCGGagGAGg -3'
miRNA:   3'- guaC-GUGgUGGGCGGC--UGCCagUUCa -5'
8992 5' -57.4 NC_002512.2 + 220970 0.66 0.905213
Target:  5'- cCcgGCcgagGCCGCCCugGCCagGAgGGUCGAGUg -3'
miRNA:   3'- -GuaCG----UGGUGGG--CGG--CUgCCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 220573 0.71 0.680461
Target:  5'- cCGUGCGCCGCCCgauggaguGCCGGgaucCGGUCGu-- -3'
miRNA:   3'- -GUACGUGGUGGG--------CGGCU----GCCAGUuca -5'
8992 5' -57.4 NC_002512.2 + 220420 0.66 0.927442
Target:  5'- --gGC-CCGCCCGCCuACGGcCAGc- -3'
miRNA:   3'- guaCGuGGUGGGCGGcUGCCaGUUca -5'
8992 5' -57.4 NC_002512.2 + 219210 0.66 0.932443
Target:  5'- -cUGCACUGCCgGgCCGGCcucggcgaGGUCGGGa -3'
miRNA:   3'- guACGUGGUGGgC-GGCUG--------CCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 216264 0.71 0.658843
Target:  5'- gGUGCGCCGCCCGCaccgccagcuCGGUCGucgAGUu -3'
miRNA:   3'- gUACGUGGUGGGCGgcu-------GCCAGU---UCA- -5'
8992 5' -57.4 NC_002512.2 + 212350 0.66 0.909358
Target:  5'- aCGUGUccaagagcgagcugGCCGCCuaCGCCGACGccgacGUCGAGa -3'
miRNA:   3'- -GUACG--------------UGGUGG--GCGGCUGC-----CAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 209212 0.67 0.872549
Target:  5'- --gGCGCCugcgGCCCGUC-ACGGUCAAa- -3'
miRNA:   3'- guaCGUGG----UGGGCGGcUGCCAGUUca -5'
8992 5' -57.4 NC_002512.2 + 206874 0.73 0.562434
Target:  5'- --gGCGCCgaGCUCGCCGACGGgUAGGUc -3'
miRNA:   3'- guaCGUGG--UGGGCGGCUGCCaGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 206539 0.68 0.85805
Target:  5'- uCGUGCucGCCGCacucguacaCCGCCGGCGGccCGGGg -3'
miRNA:   3'- -GUACG--UGGUG---------GGCGGCUGCCa-GUUCa -5'
8992 5' -57.4 NC_002512.2 + 200659 0.7 0.747634
Target:  5'- -cUGCGCgACCCgcgGCCGGCGuUCGGGUa -3'
miRNA:   3'- guACGUGgUGGG---CGGCUGCcAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 199224 0.69 0.775172
Target:  5'- --cGCGCCGCCCGguagauCCGGCGcagcccgauGUCGAGUc -3'
miRNA:   3'- guaCGUGGUGGGC------GGCUGC---------CAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 188235 0.91 0.051984
Target:  5'- uCAUGC-CCaACCCGCCGACGGUCAAGUu -3'
miRNA:   3'- -GUACGuGG-UGGGCGGCUGCCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 185474 0.67 0.872549
Target:  5'- cCGUGguCCugCCGCCG-CaGGUCAu-- -3'
miRNA:   3'- -GUACguGGugGGCGGCuG-CCAGUuca -5'
8992 5' -57.4 NC_002512.2 + 184692 0.69 0.784123
Target:  5'- --cGCGCCGCCgGUCc-CGGUCGAGa -3'
miRNA:   3'- guaCGUGGUGGgCGGcuGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 184624 0.69 0.801637
Target:  5'- --cGCgaGCC-CCCGCCGGCGGccgacggCGAGUc -3'
miRNA:   3'- guaCG--UGGuGGGCGGCUGCCa------GUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.