miRNA display CGI


Results 1 - 20 of 118 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8992 5' -57.4 NC_002512.2 + 80575 0.68 0.834889
Target:  5'- uCcgGCGgCgaGCCCGCgCGGCGGUCGAc- -3'
miRNA:   3'- -GuaCGUgG--UGGGCG-GCUGCCAGUUca -5'
8992 5' -57.4 NC_002512.2 + 97319 0.7 0.747634
Target:  5'- --gGC-CgCGCCCGCCGG-GGUCGAGg -3'
miRNA:   3'- guaCGuG-GUGGGCGGCUgCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 142107 0.69 0.784123
Target:  5'- cCcgGUACCgACCCGUCGGCGGcCGGa- -3'
miRNA:   3'- -GuaCGUGG-UGGGCGGCUGCCaGUUca -5'
8992 5' -57.4 NC_002512.2 + 11663 0.69 0.784123
Target:  5'- aUcgGCGCCgcgGCCCGCCG-CGGccCGAGg -3'
miRNA:   3'- -GuaCGUGG---UGGGCGGCuGCCa-GUUCa -5'
8992 5' -57.4 NC_002512.2 + 6894 0.69 0.792948
Target:  5'- --cGUGCCGCUCcCCGGCaGGUCGAGg -3'
miRNA:   3'- guaCGUGGUGGGcGGCUG-CCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 17740 0.69 0.792948
Target:  5'- --cGcCGCCaguGCCCGCCGACGcaCAGGUg -3'
miRNA:   3'- guaC-GUGG---UGGGCGGCUGCcaGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 1300 0.69 0.792948
Target:  5'- uCcgGCGCCugCCGCCGacacgaccGCGGUaAGGa -3'
miRNA:   3'- -GuaCGUGGugGGCGGC--------UGCCAgUUCa -5'
8992 5' -57.4 NC_002512.2 + 105200 0.68 0.83168
Target:  5'- gCGUGCGCCcggaucccgagguCCCGuCUGGCGGUgAGGg -3'
miRNA:   3'- -GUACGUGGu------------GGGC-GGCUGCCAgUUCa -5'
8992 5' -57.4 NC_002512.2 + 136494 0.68 0.834889
Target:  5'- -cUGCAUCACCgGCCucuCGGUCAcGUc -3'
miRNA:   3'- guACGUGGUGGgCGGcu-GCCAGUuCA- -5'
8992 5' -57.4 NC_002512.2 + 37102 0.7 0.738255
Target:  5'- uGUGC-CCGCgCCGCaCGACGGUgacaUAGGUg -3'
miRNA:   3'- gUACGuGGUG-GGCG-GCUGCCA----GUUCA- -5'
8992 5' -57.4 NC_002512.2 + 47438 0.7 0.738255
Target:  5'- --aGCACCacGCCCGCaCGGCGGaggcCGAGg -3'
miRNA:   3'- guaCGUGG--UGGGCG-GCUGCCa---GUUCa -5'
8992 5' -57.4 NC_002512.2 + 110802 0.71 0.709634
Target:  5'- --cGCACCuCCuCGCgCGAcCGGUCGAGg -3'
miRNA:   3'- guaCGUGGuGG-GCG-GCU-GCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 67861 0.75 0.450524
Target:  5'- aUcgGCACCACCuCGCCGuCGGcCAGGc -3'
miRNA:   3'- -GuaCGUGGUGG-GCGGCuGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 79382 0.74 0.533519
Target:  5'- -cUGCACCccgACCCGCgGGCGGaCGAGa -3'
miRNA:   3'- guACGUGG---UGGGCGgCUGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 138000 0.73 0.551777
Target:  5'- cCGUGCGCCGCgCCGCCGcccgcgccggacgGCGGccUCGGGg -3'
miRNA:   3'- -GUACGUGGUG-GGCGGC-------------UGCC--AGUUCa -5'
8992 5' -57.4 NC_002512.2 + 103231 0.73 0.552743
Target:  5'- gCGU-CGCCGCCCGUCGACGGccgcggCGAGg -3'
miRNA:   3'- -GUAcGUGGUGGGCGGCUGCCa-----GUUCa -5'
8992 5' -57.4 NC_002512.2 + 128121 0.73 0.552743
Target:  5'- --gGCGCCGuCUCGCCGAaGGUCAGGc -3'
miRNA:   3'- guaCGUGGU-GGGCGGCUgCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 28421 0.73 0.591754
Target:  5'- -cUGCACC-CCgGCCGACGGggaccaccUCGAGg -3'
miRNA:   3'- guACGUGGuGGgCGGCUGCC--------AGUUCa -5'
8992 5' -57.4 NC_002512.2 + 23329 0.71 0.660814
Target:  5'- --gGCGCCccgGgCCGCCGGCGGUguaCGAGUg -3'
miRNA:   3'- guaCGUGG---UgGGCGGCUGCCA---GUUCA- -5'
8992 5' -57.4 NC_002512.2 + 82272 0.71 0.660814
Target:  5'- --cGuCGCC-CCCGUCGAgGGUCGGGUc -3'
miRNA:   3'- guaC-GUGGuGGGCGGCUgCCAGUUCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.