miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8992 5' -57.4 NC_002512.2 + 184368 0.66 0.932443
Target:  5'- --cGcCGCCGCCCGCCG-CGGg----- -3'
miRNA:   3'- guaC-GUGGUGGGCGGCuGCCaguuca -5'
8992 5' -57.4 NC_002512.2 + 179296 0.67 0.892782
Target:  5'- --cGCACCGuccagUCCGCgGGCGG-CGAGg -3'
miRNA:   3'- guaCGUGGU-----GGGCGgCUGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 77075 0.67 0.892782
Target:  5'- -cUGCucGCCGCCCGCCGucgccGCGGaccucCGAGa -3'
miRNA:   3'- guACG--UGGUGGGCGGC-----UGCCa----GUUCa -5'
8992 5' -57.4 NC_002512.2 + 188235 0.91 0.051984
Target:  5'- uCAUGC-CCaACCCGCCGACGGUCAAGUu -3'
miRNA:   3'- -GUACGuGG-UGGGCGGCUGCCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 220420 0.66 0.927442
Target:  5'- --gGC-CCGCCCGCCuACGGcCAGc- -3'
miRNA:   3'- guaCGuGGUGGGCGGcUGCCaGUUca -5'
8992 5' -57.4 NC_002512.2 + 145352 0.66 0.927442
Target:  5'- --cGCGCCGCCCGaCGcCGGcuaCGAGg -3'
miRNA:   3'- guaCGUGGUGGGCgGCuGCCa--GUUCa -5'
8992 5' -57.4 NC_002512.2 + 225791 0.66 0.916771
Target:  5'- -cUGCGCCggccgGgCCGCgGGCGGcCGGGUg -3'
miRNA:   3'- guACGUGG-----UgGGCGgCUGCCaGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 222575 0.66 0.916771
Target:  5'- --cGcCGCgGCCCGCCGucGCGGagGAGg -3'
miRNA:   3'- guaC-GUGgUGGGCGGC--UGCCagUUCa -5'
8992 5' -57.4 NC_002512.2 + 212350 0.66 0.909358
Target:  5'- aCGUGUccaagagcgagcugGCCGCCuaCGCCGACGccgacGUCGAGa -3'
miRNA:   3'- -GUACG--------------UGGUGG--GCGGCUGC-----CAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 92155 0.67 0.899105
Target:  5'- gCGUGCaggaccugccgACCAaCCCGaCGGCGGUgGAGg -3'
miRNA:   3'- -GUACG-----------UGGU-GGGCgGCUGCCAgUUCa -5'
8992 5' -57.4 NC_002512.2 + 134591 0.66 0.905213
Target:  5'- uUcgGCGCCucgUCCGCCGACGGg----- -3'
miRNA:   3'- -GuaCGUGGu--GGGCGGCUGCCaguuca -5'
8992 5' -57.4 NC_002512.2 + 127914 0.66 0.911102
Target:  5'- aUcgGcCACgaGCCCGCCGGCGGgcccgCGGGc -3'
miRNA:   3'- -GuaC-GUGg-UGGGCGGCUGCCa----GUUCa -5'
8992 5' -57.4 NC_002512.2 + 219210 0.66 0.932443
Target:  5'- -cUGCACUGCCgGgCCGGCcucggcgaGGUCGGGa -3'
miRNA:   3'- guACGUGGUGGgC-GGCUG--------CCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 146930 0.67 0.899105
Target:  5'- cCGUGCGCCgcgACCUGCUGGCcGUgAAGc -3'
miRNA:   3'- -GUACGUGG---UGGGCGGCUGcCAgUUCa -5'
8992 5' -57.4 NC_002512.2 + 184095 0.66 0.932443
Target:  5'- --aGCACgGCCC-CCGGCGGgugCAGu- -3'
miRNA:   3'- guaCGUGgUGGGcGGCUGCCa--GUUca -5'
8992 5' -57.4 NC_002512.2 + 107601 0.66 0.916771
Target:  5'- --cGUGCgGCUCGCUGACGGgcucCAGGa -3'
miRNA:   3'- guaCGUGgUGGGCGGCUGCCa---GUUCa -5'
8992 5' -57.4 NC_002512.2 + 120887 0.67 0.899105
Target:  5'- --cGaCGCCGCCggCGCCGACGaG-CAGGUa -3'
miRNA:   3'- guaC-GUGGUGG--GCGGCUGC-CaGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 132445 0.67 0.892782
Target:  5'- -uUGCGCUcCCCGgCGGCGGgucCGGGg -3'
miRNA:   3'- guACGUGGuGGGCgGCUGCCa--GUUCa -5'
8992 5' -57.4 NC_002512.2 + 131117 0.66 0.932443
Target:  5'- --aGCugC-CCC-CCGACGGcCAGGa -3'
miRNA:   3'- guaCGugGuGGGcGGCUGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 100693 0.66 0.922217
Target:  5'- -cUGCAgCGCCCGC--ACGGUCcGGg -3'
miRNA:   3'- guACGUgGUGGGCGgcUGCCAGuUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.