miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8992 5' -57.4 NC_002512.2 + 96068 0.66 0.905213
Target:  5'- --gGUACgACUCgGCCGucuCGGUCAGGUc -3'
miRNA:   3'- guaCGUGgUGGG-CGGCu--GCCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 97319 0.7 0.747634
Target:  5'- --gGC-CgCGCCCGCCGG-GGUCGAGg -3'
miRNA:   3'- guaCGuG-GUGGGCGGCUgCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 97356 0.67 0.88558
Target:  5'- --gGCGCCGCCCGCggagcggggaccgCGGCGGcCGGa- -3'
miRNA:   3'- guaCGUGGUGGGCG-------------GCUGCCaGUUca -5'
8992 5' -57.4 NC_002512.2 + 97779 0.67 0.886246
Target:  5'- --gGCGCUGCCgGCCGAgaCGGaCGAGa -3'
miRNA:   3'- guaCGUGGUGGgCGGCU--GCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 98144 0.73 0.581945
Target:  5'- --cGCgGCCGCCCGCCccGGCGGUCGccgcGGUc -3'
miRNA:   3'- guaCG-UGGUGGGCGG--CUGCCAGU----UCA- -5'
8992 5' -57.4 NC_002512.2 + 99898 0.66 0.922217
Target:  5'- --gGCGCgGCCCGUCGAgGGcgcCGGGg -3'
miRNA:   3'- guaCGUGgUGGGCGGCUgCCa--GUUCa -5'
8992 5' -57.4 NC_002512.2 + 100693 0.66 0.922217
Target:  5'- -cUGCAgCGCCCGC--ACGGUCcGGg -3'
miRNA:   3'- guACGUgGUGGGCGgcUGCCAGuUCa -5'
8992 5' -57.4 NC_002512.2 + 101000 0.67 0.8795
Target:  5'- uGUGUcgcagacaGCUGCCCG-UGGCGGUCAGGa -3'
miRNA:   3'- gUACG--------UGGUGGGCgGCUGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 103081 0.67 0.8795
Target:  5'- --cGCACUGCCggucgcaGCCGAagcaGGUCGGGUu -3'
miRNA:   3'- guaCGUGGUGGg------CGGCUg---CCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 103231 0.73 0.552743
Target:  5'- gCGU-CGCCGCCCGUCGACGGccgcggCGAGg -3'
miRNA:   3'- -GUAcGUGGUGGGCGGCUGCCa-----GUUCa -5'
8992 5' -57.4 NC_002512.2 + 105065 0.71 0.699961
Target:  5'- uCcgGCACgCAgCCgaagaaGCCGGCGGUCGGGUc -3'
miRNA:   3'- -GuaCGUG-GUgGG------CGGCUGCCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 105200 0.68 0.83168
Target:  5'- gCGUGCGCCcggaucccgagguCCCGuCUGGCGGUgAGGg -3'
miRNA:   3'- -GUACGUGGu------------GGGC-GGCUGCCAgUUCa -5'
8992 5' -57.4 NC_002512.2 + 105541 0.7 0.719247
Target:  5'- -cUGCccgGCCGacucCCCGuuGACGGUCAGGc -3'
miRNA:   3'- guACG---UGGU----GGGCggCUGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 105621 0.68 0.818578
Target:  5'- --gGCACCGgCCGUCGuCGGUCuccGAGa -3'
miRNA:   3'- guaCGUGGUgGGCGGCuGCCAG---UUCa -5'
8992 5' -57.4 NC_002512.2 + 107601 0.66 0.916771
Target:  5'- --cGUGCgGCUCGCUGACGGgcucCAGGa -3'
miRNA:   3'- guaCGUGgUGGGCGGCUGCCa---GUUCa -5'
8992 5' -57.4 NC_002512.2 + 108425 0.72 0.611448
Target:  5'- -cUGCGCCGCCCgggGCCGGgGGcCGGGg -3'
miRNA:   3'- guACGUGGUGGG---CGGCUgCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 108667 0.73 0.581945
Target:  5'- aCAUGUACUcCCCGCCGACGa-CGAGg -3'
miRNA:   3'- -GUACGUGGuGGGCGGCUGCcaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 109107 0.71 0.680461
Target:  5'- --cGcCGCC-CCCGCCGACGGccgcCGAGUc -3'
miRNA:   3'- guaC-GUGGuGGGCGGCUGCCa---GUUCA- -5'
8992 5' -57.4 NC_002512.2 + 110525 0.67 0.865397
Target:  5'- uCGUcCACCAuCCCGCgGGCGGagAAGg -3'
miRNA:   3'- -GUAcGUGGU-GGGCGgCUGCCagUUCa -5'
8992 5' -57.4 NC_002512.2 + 110802 0.71 0.709634
Target:  5'- --cGCACCuCCuCGCgCGAcCGGUCGAGg -3'
miRNA:   3'- guaCGUGGuGG-GCG-GCU-GCCAGUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.