miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8993 5' -53.7 NC_002512.2 + 84322 0.67 0.984173
Target:  5'- cGCGUCGcgCGCCGcAGCgUCGccgcguccUCGAGcGGg -3'
miRNA:   3'- -UGCAGCa-GCGGC-UCG-AGU--------AGUUCaCC- -5'
8993 5' -53.7 NC_002512.2 + 89797 0.68 0.957487
Target:  5'- aGCGUCGUCGUCucGUUCuUCGuccgguacugauAGUGGg -3'
miRNA:   3'- -UGCAGCAGCGGcuCGAGuAGU------------UCACC- -5'
8993 5' -53.7 NC_002512.2 + 90172 0.66 0.985884
Target:  5'- uCGUCGUgGCgGGGUUUcgCGAGaGGa -3'
miRNA:   3'- uGCAGCAgCGgCUCGAGuaGUUCaCC- -5'
8993 5' -53.7 NC_002512.2 + 90559 0.7 0.926466
Target:  5'- uGCGaUCGaaagaCGCCGuGCUCAagAGGUGGc -3'
miRNA:   3'- -UGC-AGCa----GCGGCuCGAGUagUUCACC- -5'
8993 5' -53.7 NC_002512.2 + 102497 0.66 0.991354
Target:  5'- gGCGUCGUuccCGCCGcgggagucgcGGC-CGUCGGG-GGu -3'
miRNA:   3'- -UGCAGCA---GCGGC----------UCGaGUAGUUCaCC- -5'
8993 5' -53.7 NC_002512.2 + 106638 0.67 0.975478
Target:  5'- gGCGcCgGUCGUCGAGCUCgaagaaGUCGAGcccgcacUGGg -3'
miRNA:   3'- -UGCaG-CAGCGGCUCGAG------UAGUUC-------ACC- -5'
8993 5' -53.7 NC_002512.2 + 109831 0.66 0.990177
Target:  5'- cACGUCGaacCGCCGGGCgUCGgggacCGGcGUGGc -3'
miRNA:   3'- -UGCAGCa--GCGGCUCG-AGUa----GUU-CACC- -5'
8993 5' -53.7 NC_002512.2 + 113181 0.71 0.884345
Target:  5'- cGCGaccggCGUCGCCGuccGCUCcgCGAGcGGg -3'
miRNA:   3'- -UGCa----GCAGCGGCu--CGAGuaGUUCaCC- -5'
8993 5' -53.7 NC_002512.2 + 113689 0.66 0.985884
Target:  5'- gACGUUGgCGCCGAagagCAUCuuguAGUGGg -3'
miRNA:   3'- -UGCAGCaGCGGCUcga-GUAGu---UCACC- -5'
8993 5' -53.7 NC_002512.2 + 121577 0.66 0.990177
Target:  5'- cGCG-CGcCGCCauggaccacaccGAGCUCAUCAAGc-- -3'
miRNA:   3'- -UGCaGCaGCGG------------CUCGAGUAGUUCacc -5'
8993 5' -53.7 NC_002512.2 + 121678 0.71 0.870339
Target:  5'- cACGUCGcCGCCGAGUgCAUaggaGAcGUGGc -3'
miRNA:   3'- -UGCAGCaGCGGCUCGaGUAg---UU-CACC- -5'
8993 5' -53.7 NC_002512.2 + 122504 0.67 0.982309
Target:  5'- aGCGUCGUCGgacagcuuuUCGugcAGCUCGUCAucgGGg -3'
miRNA:   3'- -UGCAGCAGC---------GGC---UCGAGUAGUucaCC- -5'
8993 5' -53.7 NC_002512.2 + 128181 0.68 0.961035
Target:  5'- gACGagGUCGCCGAGCgggCcgCcGGcGGg -3'
miRNA:   3'- -UGCagCAGCGGCUCGa--GuaGuUCaCC- -5'
8993 5' -53.7 NC_002512.2 + 129362 0.71 0.877447
Target:  5'- aGCGUCGUCGCCuucuGuCUCGUgCGGGUGc -3'
miRNA:   3'- -UGCAGCAGCGGcu--C-GAGUA-GUUCACc -5'
8993 5' -53.7 NC_002512.2 + 134787 0.71 0.877447
Target:  5'- cCGcCGUCGCCGAGCUCG--AGGUc- -3'
miRNA:   3'- uGCaGCAGCGGCUCGAGUagUUCAcc -5'
8993 5' -53.7 NC_002512.2 + 135253 0.68 0.961035
Target:  5'- cCGUCGUccgCGCCGcGCUCGaCGAGgccUGGg -3'
miRNA:   3'- uGCAGCA---GCGGCuCGAGUaGUUC---ACC- -5'
8993 5' -53.7 NC_002512.2 + 137341 0.69 0.953724
Target:  5'- gACGUCGUCGCCGcGGCcgCcgCGGccGGg -3'
miRNA:   3'- -UGCAGCAGCGGC-UCGa-GuaGUUcaCC- -5'
8993 5' -53.7 NC_002512.2 + 156077 0.66 0.991354
Target:  5'- gACGcCGggCGCCGgcAGUUCGUCGAGg-- -3'
miRNA:   3'- -UGCaGCa-GCGGC--UCGAGUAGUUCacc -5'
8993 5' -53.7 NC_002512.2 + 156203 0.66 0.988464
Target:  5'- gACGUCGUcagCGCCGAGCuggccuucagcuacUCGUCc-GUGu -3'
miRNA:   3'- -UGCAGCA---GCGGCUCG--------------AGUAGuuCACc -5'
8993 5' -53.7 NC_002512.2 + 156312 0.7 0.921127
Target:  5'- cCGU-GUCGCacgggGAGCUCGUCGAGcGGc -3'
miRNA:   3'- uGCAgCAGCGg----CUCGAGUAGUUCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.