miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8993 5' -53.7 NC_002512.2 + 5087 0.71 0.870339
Target:  5'- uCGUCGUCGCCG-GCgUCGgcgCGGGcGGg -3'
miRNA:   3'- uGCAGCAGCGGCuCG-AGUa--GUUCaCC- -5'
8993 5' -53.7 NC_002512.2 + 5635 0.68 0.961035
Target:  5'- gGCGUCGggCGCCGAcccgccucccccGCUCAUUAAagaucUGGa -3'
miRNA:   3'- -UGCAGCa-GCGGCU------------CGAGUAGUUc----ACC- -5'
8993 5' -53.7 NC_002512.2 + 8242 0.68 0.970437
Target:  5'- aGCGUCG-CGCCGuagagcagGGC-CGcCGGGUGGa -3'
miRNA:   3'- -UGCAGCaGCGGC--------UCGaGUaGUUCACC- -5'
8993 5' -53.7 NC_002512.2 + 10431 0.66 0.990177
Target:  5'- cGCGUCGUCGCCGucGggCA-CGGG-GGc -3'
miRNA:   3'- -UGCAGCAGCGGCu-CgaGUaGUUCaCC- -5'
8993 5' -53.7 NC_002512.2 + 16246 0.66 0.990177
Target:  5'- uCGUCGUCGCCGucgcccgcGGCggccaagaGUCAGGgaccGGa -3'
miRNA:   3'- uGCAGCAGCGGC--------UCGag------UAGUUCa---CC- -5'
8993 5' -53.7 NC_002512.2 + 17310 0.66 0.990177
Target:  5'- cGCGUCGUCGCCGccGUcgUCGUCGu---- -3'
miRNA:   3'- -UGCAGCAGCGGCu-CG--AGUAGUucacc -5'
8993 5' -53.7 NC_002512.2 + 19156 0.7 0.924888
Target:  5'- gACGUgGUCGaaGGGCUCGUCGacgcugaggaagcgGGUGa -3'
miRNA:   3'- -UGCAgCAGCggCUCGAGUAGU--------------UCACc -5'
8993 5' -53.7 NC_002512.2 + 27421 0.73 0.789016
Target:  5'- cCGcCGUCGCCGAGCgUCcgCGgaaaaaaggagaAGUGGg -3'
miRNA:   3'- uGCaGCAGCGGCUCG-AGuaGU------------UCACC- -5'
8993 5' -53.7 NC_002512.2 + 29654 0.77 0.6045
Target:  5'- cCGUCGUCGUCGGGCUCcUCGGGcuccGGc -3'
miRNA:   3'- uGCAGCAGCGGCUCGAGuAGUUCa---CC- -5'
8993 5' -53.7 NC_002512.2 + 44796 0.68 0.959993
Target:  5'- aACGcCGUCuugacguagaagcgGCCGAGCUCccgGUCGAGgcccGGg -3'
miRNA:   3'- -UGCaGCAG--------------CGGCUCGAG---UAGUUCa---CC- -5'
8993 5' -53.7 NC_002512.2 + 47454 0.68 0.964373
Target:  5'- gGCGgaggcCGagGCCGAGUUCcgCAaggcGGUGGa -3'
miRNA:   3'- -UGCa----GCagCGGCUCGAGuaGU----UCACC- -5'
8993 5' -53.7 NC_002512.2 + 49424 0.69 0.953724
Target:  5'- gACG-CGaCGCCGAGC-CGUCGAGa-- -3'
miRNA:   3'- -UGCaGCaGCGGCUCGaGUAGUUCacc -5'
8993 5' -53.7 NC_002512.2 + 67644 0.66 0.985884
Target:  5'- -gGUCGUCcacggGCCcccggacgcGGGCUCgaccGUCGAGUGGu -3'
miRNA:   3'- ugCAGCAG-----CGG---------CUCGAG----UAGUUCACC- -5'
8993 5' -53.7 NC_002512.2 + 67767 0.66 0.990177
Target:  5'- -gGUCGUcuccggCGCCGGGgUCGUC-GGUGa -3'
miRNA:   3'- ugCAGCA------GCGGCUCgAGUAGuUCACc -5'
8993 5' -53.7 NC_002512.2 + 72878 0.66 0.988879
Target:  5'- cCGUUGUCGCgGGGCUCGggcccgAAGcGGc -3'
miRNA:   3'- uGCAGCAGCGgCUCGAGUag----UUCaCC- -5'
8993 5' -53.7 NC_002512.2 + 73111 0.68 0.961035
Target:  5'- gGCGUgGUCGcCCGAGaCgccCGUCGAGUa- -3'
miRNA:   3'- -UGCAgCAGC-GGCUC-Ga--GUAGUUCAcc -5'
8993 5' -53.7 NC_002512.2 + 74383 0.7 0.909763
Target:  5'- cCGUCGUCGCagcAGCUCAUgGGGguccGGa -3'
miRNA:   3'- uGCAGCAGCGgc-UCGAGUAgUUCa---CC- -5'
8993 5' -53.7 NC_002512.2 + 78982 0.67 0.981719
Target:  5'- aGCGUCGUCcgcgGCCGAgagaggugugGCUucggggugucagucCGUUGAGUGGg -3'
miRNA:   3'- -UGCAGCAG----CGGCU----------CGA--------------GUAGUUCACC- -5'
8993 5' -53.7 NC_002512.2 + 82265 0.66 0.991354
Target:  5'- cCGUCGUCGUCGccCcCGUCGAG-GGu -3'
miRNA:   3'- uGCAGCAGCGGCucGaGUAGUUCaCC- -5'
8993 5' -53.7 NC_002512.2 + 83135 0.67 0.975724
Target:  5'- uCGUcccCGUCGUCGAGgUCGUCGGGcccGGc -3'
miRNA:   3'- uGCA---GCAGCGGCUCgAGUAGUUCa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.