Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8993 | 5' | -53.7 | NC_002512.2 | + | 188135 | 1.11 | 0.006344 |
Target: 5'- aACGUCGUCGCCGAGCUCAUCAAGUGGa -3' miRNA: 3'- -UGCAGCAGCGGCUCGAGUAGUUCACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 29654 | 0.77 | 0.6045 |
Target: 5'- cCGUCGUCGUCGGGCUCcUCGGGcuccGGc -3' miRNA: 3'- uGCAGCAGCGGCUCGAGuAGUUCa---CC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 215620 | 0.75 | 0.723625 |
Target: 5'- uGCGgcagCGUgGCCGAGCUCuUCGccGUGGg -3' miRNA: 3'- -UGCa---GCAgCGGCUCGAGuAGUu-CACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 27421 | 0.73 | 0.789016 |
Target: 5'- cCGcCGUCGCCGAGCgUCcgCGgaaaaaaggagaAGUGGg -3' miRNA: 3'- uGCaGCAGCGGCUCG-AGuaGU------------UCACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 5087 | 0.71 | 0.870339 |
Target: 5'- uCGUCGUCGCCG-GCgUCGgcgCGGGcGGg -3' miRNA: 3'- uGCAGCAGCGGCuCG-AGUa--GUUCaCC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 121678 | 0.71 | 0.870339 |
Target: 5'- cACGUCGcCGCCGAGUgCAUaggaGAcGUGGc -3' miRNA: 3'- -UGCAGCaGCGGCUCGaGUAg---UU-CACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 134787 | 0.71 | 0.877447 |
Target: 5'- cCGcCGUCGCCGAGCUCG--AGGUc- -3' miRNA: 3'- uGCaGCAGCGGCUCGAGUagUUCAcc -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 129362 | 0.71 | 0.877447 |
Target: 5'- aGCGUCGUCGCCuucuGuCUCGUgCGGGUGc -3' miRNA: 3'- -UGCAGCAGCGGcu--C-GAGUA-GUUCACc -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 113181 | 0.71 | 0.884345 |
Target: 5'- cGCGaccggCGUCGCCGuccGCUCcgCGAGcGGg -3' miRNA: 3'- -UGCa----GCAGCGGCu--CGAGuaGUUCaCC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 74383 | 0.7 | 0.909763 |
Target: 5'- cCGUCGUCGCagcAGCUCAUgGGGguccGGa -3' miRNA: 3'- uGCAGCAGCGgc-UCGAGUAgUUCa---CC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 156312 | 0.7 | 0.921127 |
Target: 5'- cCGU-GUCGCacgggGAGCUCGUCGAGcGGc -3' miRNA: 3'- uGCAgCAGCGg----CUCGAGUAGUUCaCC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 19156 | 0.7 | 0.924888 |
Target: 5'- gACGUgGUCGaaGGGCUCGUCGacgcugaggaagcgGGUGa -3' miRNA: 3'- -UGCAgCAGCggCUCGAGUAGU--------------UCACc -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 90559 | 0.7 | 0.926466 |
Target: 5'- uGCGaUCGaaagaCGCCGuGCUCAagAGGUGGc -3' miRNA: 3'- -UGC-AGCa----GCGGCuCGAGUagUUCACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 175581 | 0.69 | 0.949742 |
Target: 5'- gGCGggucaccaCGUCGCCGuGCggguccuUCGGGUGGg -3' miRNA: 3'- -UGCa-------GCAGCGGCuCGagu----AGUUCACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 49424 | 0.69 | 0.953724 |
Target: 5'- gACG-CGaCGCCGAGC-CGUCGAGa-- -3' miRNA: 3'- -UGCaGCaGCGGCUCGaGUAGUUCacc -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 137341 | 0.69 | 0.953724 |
Target: 5'- gACGUCGUCGCCGcGGCcgCcgCGGccGGg -3' miRNA: 3'- -UGCAGCAGCGGC-UCGa-GuaGUUcaCC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 89797 | 0.68 | 0.957487 |
Target: 5'- aGCGUCGUCGUCucGUUCuUCGuccgguacugauAGUGGg -3' miRNA: 3'- -UGCAGCAGCGGcuCGAGuAGU------------UCACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 44796 | 0.68 | 0.959993 |
Target: 5'- aACGcCGUCuugacguagaagcgGCCGAGCUCccgGUCGAGgcccGGg -3' miRNA: 3'- -UGCaGCAG--------------CGGCUCGAG---UAGUUCa---CC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 5635 | 0.68 | 0.961035 |
Target: 5'- gGCGUCGggCGCCGAcccgccucccccGCUCAUUAAagaucUGGa -3' miRNA: 3'- -UGCAGCa-GCGGCU------------CGAGUAGUUc----ACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 73111 | 0.68 | 0.961035 |
Target: 5'- gGCGUgGUCGcCCGAGaCgccCGUCGAGUa- -3' miRNA: 3'- -UGCAgCAGC-GGCUC-Ga--GUAGUUCAcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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