miRNA display CGI


Results 21 - 40 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 70507 0.66 0.756142
Target:  5'- -cGaCGCCGcGGGACCCGcgaauggGACgCCCCGAc -3'
miRNA:   3'- cuCcGUGGC-CCUUGGGC-------UUG-GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 2169 0.66 0.757035
Target:  5'- cGAGGagUCGGGGACcguaCCGcGCCCCCGc -3'
miRNA:   3'- -CUCCguGGCCCUUG----GGCuUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 129565 0.66 0.774684
Target:  5'- cGAGGC-CCGGGAGgCCGuGGCCgaCCu- -3'
miRNA:   3'- -CUCCGuGGCCCUUgGGC-UUGGg-GGcu -5'
8994 3' -61.5 NC_002512.2 + 55237 0.66 0.800308
Target:  5'- -cGGCACCuGGaGAACgugCCGGACgaCCCGGa -3'
miRNA:   3'- cuCCGUGG-CC-CUUG---GGCUUGg-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 7893 0.66 0.800308
Target:  5'- -uGGCACaagugaGGGAgacgACCCGGACgaaCCUCGGg -3'
miRNA:   3'- cuCCGUGg-----CCCU----UGGGCUUG---GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 64151 0.66 0.800308
Target:  5'- -cGGCGaaGGuGAAgcgaugcgccCCCGAcCCCCCGAc -3'
miRNA:   3'- cuCCGUggCC-CUU----------GGGCUuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 86129 0.66 0.783346
Target:  5'- gGAGGUcgcggACCuGGAAgCCGAcgccgcggccGCCUCCGAg -3'
miRNA:   3'- -CUCCG-----UGGcCCUUgGGCU----------UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 18093 0.66 0.78076
Target:  5'- --cGCGgCGGGAcggcccccgcggccACCCGGGCCUCCa- -3'
miRNA:   3'- cucCGUgGCCCU--------------UGGGCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 24233 0.66 0.783346
Target:  5'- cGAGGCGUCGGGccCgCCGAcggcguCCCCCGc -3'
miRNA:   3'- -CUCCGUGGCCCuuG-GGCUu-----GGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 80701 0.66 0.791889
Target:  5'- -cGGCGuCCGGGGggcgagggcGCgCGGGCCCgCGGg -3'
miRNA:   3'- cuCCGU-GGCCCU---------UGgGCUUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 78670 0.66 0.783346
Target:  5'- -cGGCGCCGGG-GCUCGGAgCCUa-- -3'
miRNA:   3'- cuCCGUGGCCCuUGGGCUUgGGGgcu -5'
8994 3' -61.5 NC_002512.2 + 134165 0.66 0.783346
Target:  5'- cGGGgACgGGGAGccgucuuccccuCCCGGcCCCCCGu -3'
miRNA:   3'- cUCCgUGgCCCUU------------GGGCUuGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 45937 0.66 0.757035
Target:  5'- cGAGcGCGcgucCCGGGAGCagaaccagCCGAGCCgCUGAa -3'
miRNA:   3'- -CUC-CGU----GGCCCUUG--------GGCUUGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 9749 0.66 0.791889
Target:  5'- gGGGGCGgCGGagccGGACCCGccGCCCCgCGu -3'
miRNA:   3'- -CUCCGUgGCC----CUUGGGCu-UGGGG-GCu -5'
8994 3' -61.5 NC_002512.2 + 126246 0.66 0.783346
Target:  5'- cGAGGaggGCCGGGugUCCGAagccgACCUCCa- -3'
miRNA:   3'- -CUCCg--UGGCCCuuGGGCU-----UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 30597 0.66 0.791889
Target:  5'- gGAGGCcaccaACCGGaGGGCgcggauguUCGGGCCgCCCGAc -3'
miRNA:   3'- -CUCCG-----UGGCC-CUUG--------GGCUUGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 103157 0.66 0.791889
Target:  5'- aGAGGCGacgcgccgcgcCCGGcgaggacgaGGACCUGAGCCugCCCGGc -3'
miRNA:   3'- -CUCCGU-----------GGCC---------CUUGGGCUUGG--GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 128597 0.66 0.800308
Target:  5'- aGAGGCcgggacguCCGGGuaccuGCCCGuguacgcuCCCCaCGAc -3'
miRNA:   3'- -CUCCGu-------GGCCCu----UGGGCuu------GGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 97232 0.66 0.799472
Target:  5'- cGAGGCGCUGGGAgaggaGCUgCGGGCCgaguguaagcgguUCCGGg -3'
miRNA:   3'- -CUCCGUGGCCCU-----UGG-GCUUGG-------------GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 69954 0.66 0.783346
Target:  5'- -cGGcCACCGGGGACguaUCGcacaaGGCCCCCa- -3'
miRNA:   3'- cuCC-GUGGCCCUUG---GGC-----UUGGGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.