miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 7452 0.66 0.765911
Target:  5'- -cGGC-CCGGGGgaaGCCgCGGcgcggcugccgGCCCCCGc -3'
miRNA:   3'- cuCCGuGGCCCU---UGG-GCU-----------UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 126827 0.66 0.765911
Target:  5'- cGAGGUGCCGuuc-CCCGcgcuccuGCCCCCGGu -3'
miRNA:   3'- -CUCCGUGGCccuuGGGCu------UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 134165 0.66 0.783346
Target:  5'- cGGGgACgGGGAGccgucuuccccuCCCGGcCCCCCGu -3'
miRNA:   3'- cUCCgUGgCCCUU------------GGGCUuGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 18093 0.66 0.78076
Target:  5'- --cGCGgCGGGAcggcccccgcggccACCCGGGCCUCCa- -3'
miRNA:   3'- cucCGUgGCCCU--------------UGGGCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 154736 0.66 0.774684
Target:  5'- -cGG-ACaCGGGAAUCC--GCCCCCGGu -3'
miRNA:   3'- cuCCgUG-GCCCUUGGGcuUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 226496 0.66 0.774684
Target:  5'- -uGGUccuCUGGGGACCUguGGGCCCCgCGGa -3'
miRNA:   3'- cuCCGu--GGCCCUUGGG--CUUGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 129565 0.66 0.774684
Target:  5'- cGAGGC-CCGGGAGgCCGuGGCCgaCCu- -3'
miRNA:   3'- -CUCCGuGGCCCUUgGGC-UUGGg-GGcu -5'
8994 3' -61.5 NC_002512.2 + 69954 0.66 0.783346
Target:  5'- -cGGcCACCGGGGACguaUCGcacaaGGCCCCCa- -3'
miRNA:   3'- cuCC-GUGGCCCUUG---GGC-----UUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 83030 0.66 0.765911
Target:  5'- -uGGCcCCGcGcGAGCUCGAGCaCCCUGGg -3'
miRNA:   3'- cuCCGuGGC-C-CUUGGGCUUG-GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 70507 0.66 0.756142
Target:  5'- -cGaCGCCGcGGGACCCGcgaauggGACgCCCCGAc -3'
miRNA:   3'- cuCcGUGGC-CCUUGGGC-------UUG-GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 108592 0.66 0.765028
Target:  5'- gGGGGCcCCGGGGagcggcgGCCgCGGGCCcguCCCGu -3'
miRNA:   3'- -CUCCGuGGCCCU-------UGG-GCUUGG---GGGCu -5'
8994 3' -61.5 NC_002512.2 + 2169 0.66 0.757035
Target:  5'- cGAGGagUCGGGGACcguaCCGcGCCCCCGc -3'
miRNA:   3'- -CUCCguGGCCCUUG----GGCuUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 3588 0.66 0.78076
Target:  5'- cAGGCcCCGGGggUCUcggggacaggcgcaGAGCCCgCGGu -3'
miRNA:   3'- cUCCGuGGCCCuuGGG--------------CUUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 24233 0.66 0.783346
Target:  5'- cGAGGCGUCGGGccCgCCGAcggcguCCCCCGc -3'
miRNA:   3'- -CUCCGUGGCCCuuG-GGCUu-----GGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 55625 0.66 0.765911
Target:  5'- cGAGaCcCCGGG-ACCCGGACCCgggCGAg -3'
miRNA:   3'- -CUCcGuGGCCCuUGGGCUUGGGg--GCU- -5'
8994 3' -61.5 NC_002512.2 + 78670 0.66 0.783346
Target:  5'- -cGGCGCCGGG-GCUCGGAgCCUa-- -3'
miRNA:   3'- cuCCGUGGCCCuUGGGCUUgGGGgcu -5'
8994 3' -61.5 NC_002512.2 + 43908 0.66 0.783346
Target:  5'- -cGGCGCaGGGAcaGgCCGuuGCCCUCGAg -3'
miRNA:   3'- cuCCGUGgCCCU--UgGGCu-UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 121763 0.66 0.765911
Target:  5'- --cGCGCCucucGGGACCgCGGACCgCCGAg -3'
miRNA:   3'- cucCGUGGc---CCUUGG-GCUUGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 45937 0.66 0.757035
Target:  5'- cGAGcGCGcgucCCGGGAGCagaaccagCCGAGCCgCUGAa -3'
miRNA:   3'- -CUC-CGU----GGCCCUUG--------GGCUUGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 5505 0.66 0.765911
Target:  5'- --cGCGCCGGGGuCgCGAGgUCCCGGa -3'
miRNA:   3'- cucCGUGGCCCUuGgGCUUgGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.