miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 292 0.67 0.70202
Target:  5'- cGGGGgGCCaGGGcAGCCCacGCCCuCCGGc -3'
miRNA:   3'- -CUCCgUGG-CCC-UUGGGcuUGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 1917 0.68 0.64897
Target:  5'- -cGGCGCCGGG-GCCCuccucuccggcuCCCCCGc -3'
miRNA:   3'- cuCCGUGGCCCuUGGGcuu---------GGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 2169 0.66 0.757035
Target:  5'- cGAGGagUCGGGGACcguaCCGcGCCCCCGc -3'
miRNA:   3'- -CUCCguGGCCCUUG----GGCuUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 2694 0.67 0.739001
Target:  5'- --cGCGCgCGGGAGCgccugCCGcuCCCCCGGc -3'
miRNA:   3'- cucCGUG-GCCCUUG-----GGCuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 3401 0.7 0.550284
Target:  5'- -cGGCGagGGGAgcGCCCGGGCCCCgGc -3'
miRNA:   3'- cuCCGUggCCCU--UGGGCUUGGGGgCu -5'
8994 3' -61.5 NC_002512.2 + 3503 0.68 0.67372
Target:  5'- -cGGCGCCGucgucGGcccuccACCCGAGCCCgCGGg -3'
miRNA:   3'- cuCCGUGGC-----CCu-----UGGGCUUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 3588 0.66 0.78076
Target:  5'- cAGGCcCCGGGggUCUcggggacaggcgcaGAGCCCgCGGu -3'
miRNA:   3'- cUCCGuGGCCCuuGGG--------------CUUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 3885 0.71 0.503426
Target:  5'- gGAGucaGCACCGGcguCCCGGuccccuuGCCCCCGAg -3'
miRNA:   3'- -CUC---CGUGGCCcuuGGGCU-------UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 4452 0.7 0.535419
Target:  5'- cGGGCGCgGGGGucggcgucggccccaACCCGA--CCCCGAc -3'
miRNA:   3'- cUCCGUGgCCCU---------------UGGGCUugGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 4523 0.71 0.513396
Target:  5'- uGAGuuGCCGGG-ACCCGGACaccaauaCCCGGa -3'
miRNA:   3'- -CUCcgUGGCCCuUGGGCUUGg------GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 4950 0.7 0.578475
Target:  5'- cGAGcGaCACCGGcacGGACCCGGuCCCCgCGAc -3'
miRNA:   3'- -CUC-C-GUGGCC---CUUGGGCUuGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 5505 0.66 0.765911
Target:  5'- --cGCGCCGGGGuCgCGAGgUCCCGGa -3'
miRNA:   3'- cucCGUGGCCCUuGgGCUUgGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 5633 0.7 0.550284
Target:  5'- cGGGCGUCGGGcgccGACCCGccuCCCCCGc -3'
miRNA:   3'- cUCCGUGGCCC----UUGGGCuu-GGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 7285 0.75 0.313644
Target:  5'- cGAGGCcCCGGGGGCCgGAcagGCCUCCu- -3'
miRNA:   3'- -CUCCGuGGCCCUUGGgCU---UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 7452 0.66 0.765911
Target:  5'- -cGGC-CCGGGGgaaGCCgCGGcgcggcugccgGCCCCCGc -3'
miRNA:   3'- cuCCGuGGCCCU---UGG-GCU-----------UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 7499 0.67 0.739001
Target:  5'- -cGGCGCUccauGaGGAGCCaGAGCCCgCCGGg -3'
miRNA:   3'- cuCCGUGG----C-CCUUGGgCUUGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 7893 0.66 0.800308
Target:  5'- -uGGCACaagugaGGGAgacgACCCGGACgaaCCUCGGg -3'
miRNA:   3'- cuCCGUGg-----CCCU----UGGGCUUG---GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 7983 0.71 0.477561
Target:  5'- -cGGCGCUGGc-GCCCG-AUCCCCGAu -3'
miRNA:   3'- cuCCGUGGCCcuUGGGCuUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 8037 0.7 0.531724
Target:  5'- aGAGGUcCCGGu--CCCGAggcGCCCCCGc -3'
miRNA:   3'- -CUCCGuGGCCcuuGGGCU---UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 8163 0.67 0.739001
Target:  5'- cAGGCGCuCGGGGAUCuCGGcguaGCaCCCGAg -3'
miRNA:   3'- cUCCGUG-GCCCUUGG-GCU----UGgGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.