miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 187689 1.07 0.002089
Target:  5'- gGAGGCACCGGGAACCCGAACCCCCGAc -3'
miRNA:   3'- -CUCCGUGGCCCUUGGGCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 23524 0.87 0.048327
Target:  5'- uGAGGCACCGGGAGCCCGAgaucauguucgccACCaaCCCGAc -3'
miRNA:   3'- -CUCCGUGGCCCUUGGGCU-------------UGG--GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 94248 0.86 0.056383
Target:  5'- cAGGcCGCCGGcGACCCGGACCCCCGAg -3'
miRNA:   3'- cUCC-GUGGCCcUUGGGCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 129572 0.86 0.060809
Target:  5'- cGAGGCGCCGGGAcgucggcCCCGucGCCCCCGAc -3'
miRNA:   3'- -CUCCGUGGCCCUu------GGGCu-UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 72813 0.82 0.113141
Target:  5'- uGGGCGCCGGcGAcCCCGGACCCCgGGa -3'
miRNA:   3'- cUCCGUGGCC-CUuGGGCUUGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 127356 0.79 0.174369
Target:  5'- uAGGgaaACCGGGGGCCUG-ACCCCCGAc -3'
miRNA:   3'- cUCCg--UGGCCCUUGGGCuUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 152741 0.79 0.185778
Target:  5'- aGAGGCguuccgGCCGGGAGCCCGGucgaaaaggaucggACCCCgCGGu -3'
miRNA:   3'- -CUCCG------UGGCCCUUGGGCU--------------UGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 124367 0.78 0.191502
Target:  5'- cGGGCGCCGGGGuccaGCCaGAGCCCCCc- -3'
miRNA:   3'- cUCCGUGGCCCU----UGGgCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 150199 0.78 0.210096
Target:  5'- aGAGGgAuCCGGGAACCCGGagGCCgCCGGg -3'
miRNA:   3'- -CUCCgU-GGCCCUUGGGCU--UGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 101528 0.78 0.210096
Target:  5'- gGGGGCACCGcgcgacGGAGaCCGAACCCUCGAg -3'
miRNA:   3'- -CUCCGUGGC------CCUUgGGCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 58889 0.78 0.210096
Target:  5'- aGAGGUgaaACCcGGAGCCCGAGCCCuCCGu -3'
miRNA:   3'- -CUCCG---UGGcCCUUGGGCUUGGG-GGCu -5'
8994 3' -61.5 NC_002512.2 + 38657 0.78 0.214981
Target:  5'- cGGGUACCGaGGAGgCCGGggacGCCCCCGGg -3'
miRNA:   3'- cUCCGUGGC-CCUUgGGCU----UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 51090 0.78 0.214981
Target:  5'- gGAGGUACuUGGGAACCCGGGagUCCCCGu -3'
miRNA:   3'- -CUCCGUG-GCCCUUGGGCUU--GGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 53257 0.77 0.240885
Target:  5'- --aGCACCGG--AUCCGAGCCCCCGAc -3'
miRNA:   3'- cucCGUGGCCcuUGGGCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 134236 0.76 0.281462
Target:  5'- aGAGGCuguGCCGGGGGCggCCGAgccGCCCCCu- -3'
miRNA:   3'- -CUCCG---UGGCCCUUG--GGCU---UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 9556 0.75 0.293373
Target:  5'- cGAGGCcguCCGGccccccgGAGCCCG-GCCCCCGGc -3'
miRNA:   3'- -CUCCGu--GGCC-------CUUGGGCuUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 33690 0.75 0.29401
Target:  5'- gGAGGCucGCCaGGGACCCGGccgucGCCCCCu- -3'
miRNA:   3'- -CUCCG--UGGcCCUUGGGCU-----UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 7285 0.75 0.313644
Target:  5'- cGAGGCcCCGGGGGCCgGAcagGCCUCCu- -3'
miRNA:   3'- -CUCCGuGGCCCUUGGgCU---UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 121928 0.74 0.341341
Target:  5'- cGAGGCGgCGGcGGuCCCGGACCCgCGGc -3'
miRNA:   3'- -CUCCGUgGCC-CUuGGGCUUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 218662 0.74 0.348536
Target:  5'- gGAGGCGgauacCCGGGcACaCCGGGCCCgCCGGa -3'
miRNA:   3'- -CUCCGU-----GGCCCuUG-GGCUUGGG-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.