miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 81432 0.72 0.468794
Target:  5'- -cGGCuccgucccGCgGGGGGCCCG-GCCCCCGu -3'
miRNA:   3'- cuCCG--------UGgCCCUUGGGCuUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 16938 0.73 0.386111
Target:  5'- gGAGGCGCCguaGGGcGACUCGGACCgggcgCCCGAu -3'
miRNA:   3'- -CUCCGUGG---CCC-UUGGGCUUGG-----GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 15232 0.73 0.38923
Target:  5'- cGAGGCGCCGGGagGagagacugcgaggcgGCCCGcgUCCCCGc -3'
miRNA:   3'- -CUCCGUGGCCC--U---------------UGGGCuuGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 77319 0.73 0.409904
Target:  5'- cGAGGCGaCGGGGuCUCGGGCUCCUGAc -3'
miRNA:   3'- -CUCCGUgGCCCUuGGGCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 75085 0.72 0.434588
Target:  5'- cGAGGCGCCguuucGGGGGCUCGAcgucGCCgCCUGGc -3'
miRNA:   3'- -CUCCGUGG-----CCCUUGGGCU----UGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 10163 0.72 0.434588
Target:  5'- cGAGGCACgGGGGccGCCuCucGCgCCCCGAg -3'
miRNA:   3'- -CUCCGUGgCCCU--UGG-GcuUG-GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 110307 0.72 0.451514
Target:  5'- -uGGCGCgaGGGGACCCGccgGGCUCCCGc -3'
miRNA:   3'- cuCCGUGg-CCCUUGGGC---UUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 12410 0.72 0.468794
Target:  5'- -cGGCGCCGGGAuCgCGAGCUCgCCGc -3'
miRNA:   3'- cuCCGUGGCCCUuGgGCUUGGG-GGCu -5'
8994 3' -61.5 NC_002512.2 + 21186 0.72 0.468794
Target:  5'- -cGGCGagccCCGGGuACCCGuccagggacagcGGCCCCCGGg -3'
miRNA:   3'- cuCCGU----GGCCCuUGGGC------------UUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 132988 0.74 0.363248
Target:  5'- cGGGUaguaGCagGGGAACCCG-GCCCCCGGg -3'
miRNA:   3'- cUCCG----UGg-CCCUUGGGCuUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 121436 0.74 0.363248
Target:  5'- -cGGCGCCGcccggggaGGGACCCcccGGCCCCCGGc -3'
miRNA:   3'- cuCCGUGGC--------CCUUGGGc--UUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 121384 0.74 0.363248
Target:  5'- cGGGCGCCGGG--CCCGGccucGCCCuuGAc -3'
miRNA:   3'- cUCCGUGGCCCuuGGGCU----UGGGggCU- -5'
8994 3' -61.5 NC_002512.2 + 72813 0.82 0.113141
Target:  5'- uGGGCGCCGGcGAcCCCGGACCCCgGGa -3'
miRNA:   3'- cUCCGUGGCC-CUuGGGCUUGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 38657 0.78 0.214981
Target:  5'- cGGGUACCGaGGAGgCCGGggacGCCCCCGGg -3'
miRNA:   3'- cUCCGUGGC-CCUUgGGCU----UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 53257 0.77 0.240885
Target:  5'- --aGCACCGG--AUCCGAGCCCCCGAc -3'
miRNA:   3'- cucCGUGGCCcuUGGGCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 134236 0.76 0.281462
Target:  5'- aGAGGCuguGCCGGGGGCggCCGAgccGCCCCCu- -3'
miRNA:   3'- -CUCCG---UGGCCCUUG--GGCU---UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 9556 0.75 0.293373
Target:  5'- cGAGGCcguCCGGccccccgGAGCCCG-GCCCCCGGc -3'
miRNA:   3'- -CUCCGu--GGCC-------CUUGGGCuUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 33690 0.75 0.29401
Target:  5'- gGAGGCucGCCaGGGACCCGGccgucGCCCCCu- -3'
miRNA:   3'- -CUCCG--UGGcCCUUGGGCU-----UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 7285 0.75 0.313644
Target:  5'- cGAGGCcCCGGGGGCCgGAcagGCCUCCu- -3'
miRNA:   3'- -CUCCGuGGCCCUUGGgCU---UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 121928 0.74 0.341341
Target:  5'- cGAGGCGgCGGcGGuCCCGGACCCgCGGc -3'
miRNA:   3'- -CUCCGUgGCC-CUuGGGCUUGGGgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.