miRNA display CGI


Results 21 - 40 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 8260 0.68 0.654693
Target:  5'- aGGGcCGCCGGGugGACCCGcuCCCUCc- -3'
miRNA:   3'- cUCC-GUGGCCC--UUGGGCuuGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 8792 0.67 0.739001
Target:  5'- gGAGGCGCCGGaGGGCgucccccacgCCGuuccGCCgCCGGa -3'
miRNA:   3'- -CUCCGUGGCC-CUUG----------GGCu---UGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 9556 0.75 0.293373
Target:  5'- cGAGGCcguCCGGccccccgGAGCCCG-GCCCCCGGc -3'
miRNA:   3'- -CUCCGu--GGCC-------CUUGGGCuUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 9749 0.66 0.791889
Target:  5'- gGGGGCGgCGGagccGGACCCGccGCCCCgCGu -3'
miRNA:   3'- -CUCCGUgGCC----CUUGGGCu-UGGGG-GCu -5'
8994 3' -61.5 NC_002512.2 + 10163 0.72 0.434588
Target:  5'- cGAGGCACgGGGGccGCCuCucGCgCCCCGAg -3'
miRNA:   3'- -CUCCGUGgCCCU--UGG-GcuUG-GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 10452 0.66 0.808593
Target:  5'- gGGGGCGCgGaGGAGgCCGccgccGCCCCgGGc -3'
miRNA:   3'- -CUCCGUGgC-CCUUgGGCu----UGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 10546 0.66 0.808593
Target:  5'- -cGGaCGCCGGGcAGCCggCGGGCCaCgCCGAc -3'
miRNA:   3'- cuCC-GUGGCCC-UUGG--GCUUGG-G-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 11880 0.69 0.616503
Target:  5'- cGAGGUGgUGGacauCCCGAuggaGCCCCCGAa -3'
miRNA:   3'- -CUCCGUgGCCcuu-GGGCU----UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 12277 0.69 0.616503
Target:  5'- -uGGCGCCGcccGAGuCgCCGAcgACCCCCGAg -3'
miRNA:   3'- cuCCGUGGCc--CUU-G-GGCU--UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 12357 0.67 0.70202
Target:  5'- -cGGUucaACCaGGuGAACCgCGAcCCCCCGAg -3'
miRNA:   3'- cuCCG---UGG-CC-CUUGG-GCUuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 12410 0.72 0.468794
Target:  5'- -cGGCGCCGGGAuCgCGAGCUCgCCGc -3'
miRNA:   3'- cuCCGUGGCCCUuGgGCUUGGG-GGCu -5'
8994 3' -61.5 NC_002512.2 + 13457 0.69 0.606966
Target:  5'- aGGGCGgCGGcGAGCCUGGcguCCCCgGAc -3'
miRNA:   3'- cUCCGUgGCC-CUUGGGCUu--GGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 15232 0.73 0.38923
Target:  5'- cGAGGCGCCGGGagGagagacugcgaggcgGCCCGcgUCCCCGc -3'
miRNA:   3'- -CUCCGUGGCCC--U---------------UGGGCuuGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 16367 0.68 0.654693
Target:  5'- aGGGCACCcc-GACCCGGacgacGCCCUCGAa -3'
miRNA:   3'- cUCCGUGGcccUUGGGCU-----UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 16938 0.73 0.386111
Target:  5'- gGAGGCGCCguaGGGcGACUCGGACCgggcgCCCGAu -3'
miRNA:   3'- -CUCCGUGG---CCC-UUGGGCUUGG-----GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 18093 0.66 0.78076
Target:  5'- --cGCGgCGGGAcggcccccgcggccACCCGGGCCUCCa- -3'
miRNA:   3'- cucCGUgGCCCU--------------UGGGCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 18435 0.71 0.513396
Target:  5'- cGGGGCAgCCGcaGGcGCCCGAGCUCCgGGc -3'
miRNA:   3'- -CUCCGU-GGC--CCuUGGGCUUGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 20996 0.67 0.737179
Target:  5'- --cGCGCgGGGAuucccggccccuCCCGucCCCCCGAg -3'
miRNA:   3'- cucCGUGgCCCUu-----------GGGCuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 21186 0.72 0.468794
Target:  5'- -cGGCGagccCCGGGuACCCGuccagggacagcGGCCCCCGGg -3'
miRNA:   3'- cuCCGU----GGCCCuUGGGC------------UUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 21467 0.66 0.791889
Target:  5'- -cGGCGCCGGGAgcggcGCCCguaGAGCaUCCGc -3'
miRNA:   3'- cuCCGUGGCCCU-----UGGG---CUUGgGGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.