miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 167136 0.66 0.882246
Target:  5'- gUUCCuGGuCUcCGAGGUCggcgugccccGCGAGGCCGUc -3'
miRNA:   3'- -AAGG-CC-GA-GUUCCGGa---------UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 103107 0.66 0.882246
Target:  5'- gUCgGGUUCugacacAGG-CUGCGcGGGCCGCa -3'
miRNA:   3'- aAGgCCGAGu-----UCCgGAUGU-UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 158300 0.66 0.872468
Target:  5'- -gCCGGCcccCAAGGCCgcggucguccggcGCGAGuCCGCg -3'
miRNA:   3'- aaGGCCGa--GUUCCGGa------------UGUUCcGGCG- -5'
8994 5' -57.9 NC_002512.2 + 180567 0.66 0.895494
Target:  5'- -gCgGGCUCcgguGGCuCUcuauCAGGGCCGUg -3'
miRNA:   3'- aaGgCCGAGuu--CCG-GAu---GUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 210829 0.66 0.888978
Target:  5'- cUCCGGUgggaCAcGGCCgucugGGGGCUGCu -3'
miRNA:   3'- aAGGCCGa---GUuCCGGaug--UUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 90383 0.66 0.895494
Target:  5'- gUCUGcacGCUCGAGGUCUugccgGCGccGGCCGUg -3'
miRNA:   3'- aAGGC---CGAGUUCCGGA-----UGUu-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 208389 0.66 0.878106
Target:  5'- -cCCGacGCUgCGAGGCCcgccugcggaugcucUACGGGcGCCGCu -3'
miRNA:   3'- aaGGC--CGA-GUUCCGG---------------AUGUUC-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 168709 0.66 0.894852
Target:  5'- gUCCGacgccgucggggaGCUCGugcccuccuugcAGGCCgUGCAGGcGCUGCg -3'
miRNA:   3'- aAGGC-------------CGAGU------------UCCGG-AUGUUC-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 154704 0.66 0.871038
Target:  5'- gUCCGGCgUCGAgcggcgcgacggaacGGCgUUGCGuccgcGGCCGCg -3'
miRNA:   3'- aAGGCCG-AGUU---------------CCG-GAUGUu----CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 95841 0.66 0.888978
Target:  5'- -gCCcGCagGAGGCCggggGCGgcguccucccaGGGCCGCg -3'
miRNA:   3'- aaGGcCGagUUCCGGa---UGU-----------UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 94654 0.66 0.882246
Target:  5'- --aCGGcCUCGAGGCggccCGGGGCCGg -3'
miRNA:   3'- aagGCC-GAGUUCCGgau-GUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 116238 0.66 0.875303
Target:  5'- -cCCGGagaaccaCGAGGCCacccUGCAGGuGCUGCg -3'
miRNA:   3'- aaGGCCga-----GUUCCGG----AUGUUC-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 222197 0.66 0.888314
Target:  5'- -gCCGGCgucguccguuucuUCGucgggguGGCCguCGGGGCCGCg -3'
miRNA:   3'- aaGGCCG-------------AGUu------CCGGauGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 178674 0.66 0.882246
Target:  5'- gUCCaGGUgcgacacgucCGAGGCCcGCAGcgcGGCCGCc -3'
miRNA:   3'- aAGG-CCGa---------GUUCCGGaUGUU---CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 123512 0.66 0.895494
Target:  5'- cUCCuGUUCAacaccugacGGGCC-GCGAGGUgGCg -3'
miRNA:   3'- aAGGcCGAGU---------UCCGGaUGUUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 203305 0.66 0.89161
Target:  5'- -gCCGGC-CGugcacgucgcguaguAGGCC---AGGGCCGCg -3'
miRNA:   3'- aaGGCCGaGU---------------UCCGGaugUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 47210 0.66 0.868153
Target:  5'- -cCCGGCcccagaaccgcaUCAAGGaguucgGCGAGGCCGa -3'
miRNA:   3'- aaGGCCG------------AGUUCCgga---UGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 210970 0.66 0.875303
Target:  5'- nUCCgGGCccugugUCGc-GCCUGCGuGGCCGCg -3'
miRNA:   3'- aAGG-CCG------AGUucCGGAUGUuCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 193957 0.66 0.868153
Target:  5'- gUCUGGCgcgaGAGGCCgccgGCGAGcuccugaCCGCg -3'
miRNA:   3'- aAGGCCGag--UUCCGGa---UGUUCc------GGCG- -5'
8994 5' -57.9 NC_002512.2 + 216571 0.66 0.895494
Target:  5'- aUgCGGC---GGGCCaGCGAGGCCa- -3'
miRNA:   3'- aAgGCCGaguUCCGGaUGUUCCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.