miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 9534 0.66 0.875303
Target:  5'- --gCGGC-CAcGGCCacggcguugACGAGGCCGUc -3'
miRNA:   3'- aagGCCGaGUuCCGGa--------UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 28427 0.66 0.895494
Target:  5'- -cCCGGCcgaCGGGGaCCaccuCGAGGCCGa -3'
miRNA:   3'- aaGGCCGa--GUUCC-GGau--GUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 105034 0.66 0.895494
Target:  5'- gUCCGGgucCUCGucgcGGGCCUcgcucgGCGAcGGCgGCg -3'
miRNA:   3'- aAGGCC---GAGU----UCCGGA------UGUU-CCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 81251 0.66 0.868153
Target:  5'- gUCCGGC----GGCCUGCGguugAGGUCGa -3'
miRNA:   3'- aAGGCCGaguuCCGGAUGU----UCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 10138 0.66 0.888314
Target:  5'- gUUCGGcCUCAgcagaagAGGUCggcgagGCAcggGGGCCGCc -3'
miRNA:   3'- aAGGCC-GAGU-------UCCGGa-----UGU---UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 47452 0.66 0.875303
Target:  5'- --aCGGCggaggcCGAGGCCgaguuccGCAAGGCgGUg -3'
miRNA:   3'- aagGCCGa-----GUUCCGGa------UGUUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 116720 0.66 0.868153
Target:  5'- -gCCGGUcgCGucccgcccGGCCgcgGCGAGGCCGg -3'
miRNA:   3'- aaGGCCGa-GUu-------CCGGa--UGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 86105 0.66 0.894852
Target:  5'- --gCGGCUCAuggacccGGGCgCggAgGAGGUCGCg -3'
miRNA:   3'- aagGCCGAGU-------UCCG-Ga-UgUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 133877 0.66 0.882246
Target:  5'- --gCGGCUCGAGGagcgGCucGGCCGg -3'
miRNA:   3'- aagGCCGAGUUCCgga-UGuuCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 47210 0.66 0.868153
Target:  5'- -cCCGGCcccagaaccgcaUCAAGGaguucgGCGAGGCCGa -3'
miRNA:   3'- aaGGCCG------------AGUUCCgga---UGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 15742 0.66 0.895494
Target:  5'- -cCCGGUagaugccgUCgAAGGCgCU--GAGGCCGCa -3'
miRNA:   3'- aaGGCCG--------AG-UUCCG-GAugUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 216571 0.66 0.895494
Target:  5'- aUgCGGC---GGGCCaGCGAGGCCa- -3'
miRNA:   3'- aAgGCCGaguUCCGGaUGUUCCGGcg -5'
8994 5' -57.9 NC_002512.2 + 82303 0.66 0.895494
Target:  5'- -aCgGGCguagCGcuGGGUgUAgAGGGCCGCg -3'
miRNA:   3'- aaGgCCGa---GU--UCCGgAUgUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 97853 0.66 0.875303
Target:  5'- cUCCGGUcCcuGGCCgacgACGucGCCGCc -3'
miRNA:   3'- aAGGCCGaGuuCCGGa---UGUucCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 95242 0.66 0.868153
Target:  5'- cUCCGGag-GGGGCgUccGgAGGGCCGCg -3'
miRNA:   3'- aAGGCCgagUUCCGgA--UgUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 108962 0.66 0.868153
Target:  5'- -gUCGGgUCGcccGGGuCCgucaGCAGGGCCGUg -3'
miRNA:   3'- aaGGCCgAGU---UCC-GGa---UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 101477 0.66 0.882246
Target:  5'- cUCCGGCgaccccgcCAccGGGCUcgagACGGGGuCCGCc -3'
miRNA:   3'- aAGGCCGa-------GU--UCCGGa---UGUUCC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 117503 0.66 0.882246
Target:  5'- -gCUGGUUCAAGGCCgcCAccGCCa- -3'
miRNA:   3'- aaGGCCGAGUUCCGGauGUucCGGcg -5'
8994 5' -57.9 NC_002512.2 + 45108 0.66 0.868153
Target:  5'- -cCCGGgccacgucCUCGGGGUCgACGaccacGGGCCGCc -3'
miRNA:   3'- aaGGCC--------GAGUUCCGGaUGU-----UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 139786 0.66 0.895494
Target:  5'- gUCCGGCgCAcccuccAGGCCgGCGgGGGCCu- -3'
miRNA:   3'- aAGGCCGaGU------UCCGGaUGU-UCCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.