miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 75553 0.7 0.701701
Target:  5'- aUCCgcgGGCUC---GCCgggGCGGGGCCGCc -3'
miRNA:   3'- aAGG---CCGAGuucCGGa--UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 129553 0.7 0.6522
Target:  5'- aUUgGGCgucgaCGAGGCCcGgGAGGCCGUg -3'
miRNA:   3'- aAGgCCGa----GUUCCGGaUgUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 35030 0.7 0.662162
Target:  5'- --aCGGCU-GAGGCCgauCGGGGuCCGCa -3'
miRNA:   3'- aagGCCGAgUUCCGGau-GUUCC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 50704 0.7 0.672102
Target:  5'- -aCCGGCcCGAGGaCCcgGCgAAGGUCGCc -3'
miRNA:   3'- aaGGCCGaGUUCC-GGa-UG-UUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 4069 0.7 0.672102
Target:  5'- --gCGGCUCGAGGUCccagGCcacccGGCCGCc -3'
miRNA:   3'- aagGCCGAGUUCCGGa---UGuu---CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 131024 0.7 0.672102
Target:  5'- --aCGcGCUCGAGGgCguCGGGGCCGCg -3'
miRNA:   3'- aagGC-CGAGUUCCgGauGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 98315 0.7 0.676069
Target:  5'- uUUCCcgaggGGCUCGGGGCCggggACGGGGaggggggcggccccuCCGCc -3'
miRNA:   3'- -AAGG-----CCGAGUUCCGGa---UGUUCC---------------GGCG- -5'
8994 5' -57.9 NC_002512.2 + 127164 0.7 0.68201
Target:  5'- aUCCGGgaCu--GCC-GCGAGGCCGCc -3'
miRNA:   3'- aAGGCCgaGuucCGGaUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 5185 0.7 0.701701
Target:  5'- -gCCGGCcccagCAGGGCggGCAGGaCCGCg -3'
miRNA:   3'- aaGGCCGa----GUUCCGgaUGUUCcGGCG- -5'
8994 5' -57.9 NC_002512.2 + 81362 0.7 0.6522
Target:  5'- cUCgCGGC-CGGGGCggGCGGcGGCCGCc -3'
miRNA:   3'- aAG-GCCGaGUUCCGgaUGUU-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 62856 0.7 0.6522
Target:  5'- -aUgGGCaggCAGGGCagcACGGGGCCGCg -3'
miRNA:   3'- aaGgCCGa--GUUCCGga-UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 130145 0.7 0.6522
Target:  5'- gUCgCGGCcgCGGGGCCcgGCGgcGGGCCGg -3'
miRNA:   3'- aAG-GCCGa-GUUCCGGa-UGU--UCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 11718 0.73 0.504836
Target:  5'- -gCCGGCguacCGAGGCUacggggACGAGGCCGg -3'
miRNA:   3'- aaGGCCGa---GUUCCGGa-----UGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 106791 0.73 0.508622
Target:  5'- gUCgGGgUCGGGGUCgacgucgggaggggGCGAGGCCGCc -3'
miRNA:   3'- aAGgCCgAGUUCCGGa-------------UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 6342 0.73 0.523879
Target:  5'- -aCCgGGCgCGGGGCCgGC-GGGCCGCg -3'
miRNA:   3'- aaGG-CCGaGUUCCGGaUGuUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 135264 0.73 0.533503
Target:  5'- -gCCGcGCUCGacgAGGCCU---GGGCCGCc -3'
miRNA:   3'- aaGGC-CGAGU---UCCGGAuguUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 97764 0.72 0.58245
Target:  5'- gUCUuGCUCGcGGCCUACcGGGCgGCc -3'
miRNA:   3'- aAGGcCGAGUuCCGGAUGuUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 112629 0.71 0.602309
Target:  5'- gUCCgGGCUCAGguuGGCCgcCAGGGUCGg -3'
miRNA:   3'- aAGG-CCGAGUU---CCGGauGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 88983 0.71 0.602309
Target:  5'- cUCCGGCUUcguGGCCgg-GGGGCCGa -3'
miRNA:   3'- aAGGCCGAGuu-CCGGaugUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 135733 0.71 0.632236
Target:  5'- cUUCauGCUCAGGGUCUGCcuccGCCGCg -3'
miRNA:   3'- -AAGgcCGAGUUCCGGAUGuuc-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.