miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 3373 0.67 0.853253
Target:  5'- --aCGGCggCAGGGCCgccaGCAGGacCCGCg -3'
miRNA:   3'- aagGCCGa-GUUCCGGa---UGUUCc-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 3670 0.69 0.711468
Target:  5'- cUCCGGCUCcccggugauGGCCc----GGCCGCg -3'
miRNA:   3'- aAGGCCGAGuu-------CCGGauguuCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 4069 0.7 0.672102
Target:  5'- --gCGGCUCGAGGUCccagGCcacccGGCCGCc -3'
miRNA:   3'- aagGCCGAGUUCCGGa---UGuu---CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 5185 0.7 0.701701
Target:  5'- -gCCGGCcccagCAGGGCggGCAGGaCCGCg -3'
miRNA:   3'- aaGGCCGa----GUUCCGgaUGUUCcGGCG- -5'
8994 5' -57.9 NC_002512.2 + 5244 0.69 0.749805
Target:  5'- cUCgGGCgcguAGGCC---GAGGCCGCg -3'
miRNA:   3'- aAGgCCGagu-UCCGGaugUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 6342 0.73 0.523879
Target:  5'- -aCCgGGCgCGGGGCCgGC-GGGCCGCg -3'
miRNA:   3'- aaGG-CCGaGUUCCGGaUGuUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 7277 0.69 0.749805
Target:  5'- aUCgGGCgCGAGGCCccgGGGGCCGg -3'
miRNA:   3'- aAGgCCGaGUUCCGGaugUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 8100 0.67 0.83759
Target:  5'- -gCCGGCguagagCAGGcGCCaggacACGAcGGCCGCc -3'
miRNA:   3'- aaGGCCGa-----GUUC-CGGa----UGUU-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 8307 0.67 0.821216
Target:  5'- cUCCGGgUCGAcGGa--GCAGGGCCGg -3'
miRNA:   3'- aAGGCCgAGUU-CCggaUGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 9461 0.69 0.711468
Target:  5'- cUCCGGCggcuGGCCguagGCGggcGGGcCCGCg -3'
miRNA:   3'- aAGGCCGaguuCCGGa---UGU---UCC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 9534 0.66 0.875303
Target:  5'- --gCGGC-CAcGGCCacggcguugACGAGGCCGUc -3'
miRNA:   3'- aagGCCGaGUuCCGGa--------UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 10138 0.66 0.888314
Target:  5'- gUUCGGcCUCAgcagaagAGGUCggcgagGCAcggGGGCCGCc -3'
miRNA:   3'- aAGGCC-GAGU-------UCCGGa-----UGU---UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 10443 0.67 0.853253
Target:  5'- gUCgGGCaCGGGGgCgcggAgGAGGCCGCc -3'
miRNA:   3'- aAGgCCGaGUUCCgGa---UgUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 11718 0.73 0.504836
Target:  5'- -gCCGGCguacCGAGGCUacggggACGAGGCCGg -3'
miRNA:   3'- aaGGCCGa---GUUCCGGa-----UGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 15742 0.66 0.895494
Target:  5'- -cCCGGUagaugccgUCgAAGGCgCU--GAGGCCGCa -3'
miRNA:   3'- aaGGCCG--------AG-UUCCG-GAugUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 20635 0.68 0.786567
Target:  5'- gUCCGGUUCGccgagcGGGCCcgggACAGGaGCuCGUg -3'
miRNA:   3'- aAGGCCGAGU------UCCGGa---UGUUC-CG-GCG- -5'
8994 5' -57.9 NC_002512.2 + 26489 0.67 0.845514
Target:  5'- gUUCGuGCUCGucauugaaGGGCCUGgAAuGCCGCc -3'
miRNA:   3'- aAGGC-CGAGU--------UCCGGAUgUUcCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 28427 0.66 0.895494
Target:  5'- -cCCGGCcgaCGGGGaCCaccuCGAGGCCGa -3'
miRNA:   3'- aaGGCCGa--GUUCC-GGau--GUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 31733 0.67 0.860801
Target:  5'- -gCCGGCgcCGAcccGGCCcgcGCGGGGCuCGCg -3'
miRNA:   3'- aaGGCCGa-GUU---CCGGa--UGUUCCG-GCG- -5'
8994 5' -57.9 NC_002512.2 + 32971 0.68 0.777554
Target:  5'- -gCCGuGCUCucGGCCUccAUGAGGCUGg -3'
miRNA:   3'- aaGGC-CGAGuuCCGGA--UGUUCCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.