miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 187723 1.08 0.002916
Target:  5'- uUUCCGGCUCAAGGCCUACAAGGCCGCc -3'
miRNA:   3'- -AAGGCCGAGUUCCGGAUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 128744 0.83 0.128797
Target:  5'- cUUCUGGCUCAAGGUCUACGAcGcGCUGCg -3'
miRNA:   3'- -AAGGCCGAGUUCCGGAUGUU-C-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 156823 0.79 0.25536
Target:  5'- -gUCGGCaaccugugCGAGGCCUGCGGGGgCCGCu -3'
miRNA:   3'- aaGGCCGa-------GUUCCGGAUGUUCC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 91855 0.76 0.357924
Target:  5'- -cCCGGCUCAu-GCCccCGAGGCCGCc -3'
miRNA:   3'- aaGGCCGAGUucCGGauGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 133470 0.76 0.365705
Target:  5'- -aCCGGCgggagCGAGGCUcggucCGAGGCCGCc -3'
miRNA:   3'- aaGGCCGa----GUUCCGGau---GUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 158542 0.76 0.373601
Target:  5'- -cCCGGCUgGuGGaCCUGCugguGGGCCGCu -3'
miRNA:   3'- aaGGCCGAgUuCC-GGAUGu---UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 149399 0.75 0.406323
Target:  5'- cUCCGGCUCcucgacGGGCC-GCGAGGggaCCGCg -3'
miRNA:   3'- aAGGCCGAGu-----UCCGGaUGUUCC---GGCG- -5'
8994 5' -57.9 NC_002512.2 + 210546 0.75 0.406323
Target:  5'- gUCCGGCaUCGucuGGUgUACGAGGUCGUg -3'
miRNA:   3'- aAGGCCG-AGUu--CCGgAUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 135230 0.74 0.432016
Target:  5'- -cCCGGCcCcGGGCCgccuCGAGGCCGUc -3'
miRNA:   3'- aaGGCCGaGuUCCGGau--GUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 164185 0.74 0.44877
Target:  5'- cUCCGGggcCUCGacgacuucaugcaGGGCCU-CGGGGCCGCc -3'
miRNA:   3'- aAGGCC---GAGU-------------UCCGGAuGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 162143 0.74 0.464968
Target:  5'- -cCCGGCUCGcgAGGCCgGCAcgccgaccgcgaaaGcGGCCGCg -3'
miRNA:   3'- aaGGCCGAGU--UCCGGaUGU--------------U-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 157736 0.74 0.467698
Target:  5'- -gUCGGCguccaUCAAGGCCUGCAAgauguccgugcGGUCGCu -3'
miRNA:   3'- aaGGCCG-----AGUUCCGGAUGUU-----------CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 139156 0.73 0.486099
Target:  5'- cUCUGGUUCGAGGCCgucuu-GCCGCa -3'
miRNA:   3'- aAGGCCGAGUUCCGGauguucCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 228191 0.73 0.486099
Target:  5'- gUCCGGgagaccuacUUCGAGGCCgcgguCGAGGCCGg -3'
miRNA:   3'- aAGGCC---------GAGUUCCGGau---GUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 121345 0.73 0.503892
Target:  5'- cUCCGGCggCGGGGCCguuggACGgcggagaGGGCCGg -3'
miRNA:   3'- aAGGCCGa-GUUCCGGa----UGU-------UCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 11718 0.73 0.504836
Target:  5'- -gCCGGCguacCGAGGCUacggggACGAGGCCGg -3'
miRNA:   3'- aaGGCCGa---GUUCCGGa-----UGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 106791 0.73 0.508622
Target:  5'- gUCgGGgUCGGGGUCgacgucgggaggggGCGAGGCCGCc -3'
miRNA:   3'- aAGgCCgAGUUCCGGa-------------UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 193473 0.73 0.523879
Target:  5'- cUCCGGgaCGAGGCCcACGAcGGCCu- -3'
miRNA:   3'- aAGGCCgaGUUCCGGaUGUU-CCGGcg -5'
8994 5' -57.9 NC_002512.2 + 6342 0.73 0.523879
Target:  5'- -aCCgGGCgCGGGGCCgGC-GGGCCGCg -3'
miRNA:   3'- aaGG-CCGaGUUCCGGaUGuUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 46761 0.73 0.533503
Target:  5'- -aCCGGCUUcAGGUUguguuuCGGGGCCGCc -3'
miRNA:   3'- aaGGCCGAGuUCCGGau----GUUCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.