Results 21 - 40 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8994 | 5' | -57.9 | NC_002512.2 | + | 135264 | 0.73 | 0.533503 |
Target: 5'- -gCCGcGCUCGacgAGGCCU---GGGCCGCc -3' miRNA: 3'- aaGGC-CGAGU---UCCGGAuguUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 219354 | 0.72 | 0.543189 |
Target: 5'- -cCCGGCguccgCGAGGuCCUGCGccucugcucccuGGGCUGCc -3' miRNA: 3'- aaGGCCGa----GUUCC-GGAUGU------------UCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 97764 | 0.72 | 0.58245 |
Target: 5'- gUCUuGCUCGcGGCCUACcGGGCgGCc -3' miRNA: 3'- aAGGcCGAGUuCCGGAUGuUCCGgCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 132107 | 0.72 | 0.592366 |
Target: 5'- -aCCggGGCUCgAGGGCCgcccGguAGGCCGCg -3' miRNA: 3'- aaGG--CCGAG-UUCCGGa---UguUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 88983 | 0.71 | 0.602309 |
Target: 5'- cUCCGGCUUcguGGCCgg-GGGGCCGa -3' miRNA: 3'- aAGGCCGAGuu-CCGGaugUUCCGGCg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 103473 | 0.71 | 0.602309 |
Target: 5'- --gCGGCUC-GGGUCUcgGCGGcGGCCGCg -3' miRNA: 3'- aagGCCGAGuUCCGGA--UGUU-CCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 112629 | 0.71 | 0.602309 |
Target: 5'- gUCCgGGCUCAGguuGGCCgcCAGGGUCGg -3' miRNA: 3'- aAGG-CCGAGUU---CCGGauGUUCCGGCg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 183467 | 0.71 | 0.612273 |
Target: 5'- -gUCGGCgccgccacCAAGGCCgUGCugcGGGCCGCc -3' miRNA: 3'- aaGGCCGa-------GUUCCGG-AUGu--UCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 135733 | 0.71 | 0.632236 |
Target: 5'- cUUCauGCUCAGGGUCUGCcuccGCCGCg -3' miRNA: 3'- -AAGgcCGAGUUCCGGAUGuuc-CGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 210945 | 0.71 | 0.632236 |
Target: 5'- gUUCCGcCcCGAGGCCaACGAGGUCGUc -3' miRNA: 3'- -AAGGCcGaGUUCCGGaUGUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 153159 | 0.71 | 0.642222 |
Target: 5'- gUCCGGa--AAGGCgacCUACGGGGCgGCg -3' miRNA: 3'- aAGGCCgagUUCCG---GAUGUUCCGgCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 130145 | 0.7 | 0.6522 |
Target: 5'- gUCgCGGCcgCGGGGCCcgGCGgcGGGCCGg -3' miRNA: 3'- aAG-GCCGa-GUUCCGGa-UGU--UCCGGCg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 62856 | 0.7 | 0.6522 |
Target: 5'- -aUgGGCaggCAGGGCagcACGGGGCCGCg -3' miRNA: 3'- aaGgCCGa--GUUCCGga-UGUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 81362 | 0.7 | 0.6522 |
Target: 5'- cUCgCGGC-CGGGGCggGCGGcGGCCGCc -3' miRNA: 3'- aAG-GCCGaGUUCCGgaUGUU-CCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 129553 | 0.7 | 0.6522 |
Target: 5'- aUUgGGCgucgaCGAGGCCcGgGAGGCCGUg -3' miRNA: 3'- aAGgCCGa----GUUCCGGaUgUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 35030 | 0.7 | 0.662162 |
Target: 5'- --aCGGCU-GAGGCCgauCGGGGuCCGCa -3' miRNA: 3'- aagGCCGAgUUCCGGau-GUUCC-GGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 149046 | 0.7 | 0.662162 |
Target: 5'- gUCCcgaGGCUC---GCCUACGGGGcCCGCu -3' miRNA: 3'- aAGG---CCGAGuucCGGAUGUUCC-GGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 221233 | 0.7 | 0.662162 |
Target: 5'- --aCGGCUUGAGGUCgauCGGccGGCCGCg -3' miRNA: 3'- aagGCCGAGUUCCGGau-GUU--CCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 226568 | 0.7 | 0.662162 |
Target: 5'- cUCCGGCUCGcgcuccccGGCC-AgGAGGgCGCg -3' miRNA: 3'- aAGGCCGAGUu-------CCGGaUgUUCCgGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 222146 | 0.7 | 0.665146 |
Target: 5'- -cCCGGCUCcgcccccGAGgaccgcuaucccgacGCCUACucccGGGCCGCg -3' miRNA: 3'- aaGGCCGAG-------UUC---------------CGGAUGu---UCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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