miRNA display CGI


Results 21 - 40 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 34976 0.67 0.83759
Target:  5'- gUCCGGCU--GGGCCUcGCGuc-CCGCg -3'
miRNA:   3'- aAGGCCGAguUCCGGA-UGUuccGGCG- -5'
8994 5' -57.9 NC_002512.2 + 35030 0.7 0.662162
Target:  5'- --aCGGCU-GAGGCCgauCGGGGuCCGCa -3'
miRNA:   3'- aagGCCGAgUUCCGGau-GUUCC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 36113 0.67 0.846296
Target:  5'- -aCCGGCUguaaaacagaggacgGAGGCgacgaccGCGAGGCCGCg -3'
miRNA:   3'- aaGGCCGAg--------------UUCCGga-----UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 37721 0.68 0.768417
Target:  5'- cUCUGGCgaucaugcacgUCAAGGCggucacgACGAcGGCCGCa -3'
miRNA:   3'- aAGGCCG-----------AGUUCCGga-----UGUU-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 40356 0.67 0.845514
Target:  5'- aUUCCc-CUCGGGGCCUGC---GCCGCu -3'
miRNA:   3'- -AAGGccGAGUUCCGGAUGuucCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 41092 0.69 0.749805
Target:  5'- -gCCGcGaUCGGGGCCgcCGAGGCCGg -3'
miRNA:   3'- aaGGC-CgAGUUCCGGauGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 41530 0.67 0.845514
Target:  5'- --gUGGUUgAAGGCCUGguaGAGGuuGCg -3'
miRNA:   3'- aagGCCGAgUUCCGGAUg--UUCCggCG- -5'
8994 5' -57.9 NC_002512.2 + 42986 0.67 0.845514
Target:  5'- -gCUGGUUCccgacgAGGGCCaGC-AGGCUGCg -3'
miRNA:   3'- aaGGCCGAG------UUCCGGaUGuUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 45108 0.66 0.868153
Target:  5'- -cCCGGgccacgucCUCGGGGUCgACGaccacGGGCCGCc -3'
miRNA:   3'- aaGGCC--------GAGUUCCGGaUGU-----UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 46761 0.73 0.533503
Target:  5'- -aCCGGCUUcAGGUUguguuuCGGGGCCGCc -3'
miRNA:   3'- aaGGCCGAGuUCCGGau----GUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 47210 0.66 0.868153
Target:  5'- -cCCGGCcccagaaccgcaUCAAGGaguucgGCGAGGCCGa -3'
miRNA:   3'- aaGGCCG------------AGUUCCgga---UGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 47452 0.66 0.875303
Target:  5'- --aCGGCggaggcCGAGGCCgaguuccGCAAGGCgGUg -3'
miRNA:   3'- aagGCCGa-----GUUCCGGa------UGUUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 50704 0.7 0.672102
Target:  5'- -aCCGGCcCGAGGaCCcgGCgAAGGUCGCc -3'
miRNA:   3'- aaGGCCGaGUUCC-GGa-UG-UUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 57010 0.67 0.821216
Target:  5'- -gCCGGgUCGGcGGUCUgaccggggggaGCgGAGGCCGCg -3'
miRNA:   3'- aaGGCCgAGUU-CCGGA-----------UG-UUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 62571 0.67 0.845514
Target:  5'- uUUUCGaaCUCGAGGCgcACGGGGUCGCg -3'
miRNA:   3'- -AAGGCc-GAGUUCCGgaUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 62726 0.67 0.845514
Target:  5'- gUCgCGG-UCGAcGGCCUcGCGGGGCaCGCc -3'
miRNA:   3'- aAG-GCCgAGUU-CCGGA-UGUUCCG-GCG- -5'
8994 5' -57.9 NC_002512.2 + 62856 0.7 0.6522
Target:  5'- -aUgGGCaggCAGGGCagcACGGGGCCGCg -3'
miRNA:   3'- aaGgCCGa--GUUCCGga-UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 65681 0.67 0.860801
Target:  5'- -cCCGGCggcccCGAGGcCCUGCAugaagucgucgAGGCCcCg -3'
miRNA:   3'- aaGGCCGa----GUUCC-GGAUGU-----------UCCGGcG- -5'
8994 5' -57.9 NC_002512.2 + 69505 0.68 0.81278
Target:  5'- -cCCcGCgCAAGGCCUuccAC-AGGCCGUg -3'
miRNA:   3'- aaGGcCGaGUUCCGGA---UGuUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 71582 0.69 0.749805
Target:  5'- -gCCGGaCgacCGcGGCCUugGGGGCCGg -3'
miRNA:   3'- aaGGCC-Ga--GUuCCGGAugUUCCGGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.