miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8996 3' -57 NC_002512.2 + 153741 0.66 0.954468
Target:  5'- uCCGUGGgGggGUGGUCGaaUCGGaCGACGu -3'
miRNA:   3'- -GGCGCUgCggCACCAGU--AGCC-GUUGC- -5'
8996 3' -57 NC_002512.2 + 57956 0.66 0.942394
Target:  5'- gCGCGGCGCgGcGGgcgaaGagGGCGACGa -3'
miRNA:   3'- gGCGCUGCGgCaCCag---UagCCGUUGC- -5'
8996 3' -57 NC_002512.2 + 99213 0.66 0.944113
Target:  5'- uCCGCGGcCGCCGccgugugGGUCGUgcgcaucuggugcccCGGCGcCGu -3'
miRNA:   3'- -GGCGCU-GCGGCa------CCAGUA---------------GCCGUuGC- -5'
8996 3' -57 NC_002512.2 + 8979 0.66 0.946628
Target:  5'- cCCGacugGACGaacuCGUagaGGUCGUCGGCcACGa -3'
miRNA:   3'- -GGCg---CUGCg---GCA---CCAGUAGCCGuUGC- -5'
8996 3' -57 NC_002512.2 + 35140 0.66 0.946628
Target:  5'- cCCGacuGGCGCCcacgGUGGagAUCGGCAcCa -3'
miRNA:   3'- -GGCg--CUGCGG----CACCagUAGCCGUuGc -5'
8996 3' -57 NC_002512.2 + 62715 0.66 0.954468
Target:  5'- aCGCGcagcGCGUCGcGGUCGaCGGCcucGCGg -3'
miRNA:   3'- gGCGC----UGCGGCaCCAGUaGCCGu--UGC- -5'
8996 3' -57 NC_002512.2 + 106677 0.66 0.941959
Target:  5'- -aGCGucgguacGCGUCGcGGUguUCGGCGAUGg -3'
miRNA:   3'- ggCGC-------UGCGGCaCCAguAGCCGUUGC- -5'
8996 3' -57 NC_002512.2 + 80862 0.66 0.946628
Target:  5'- aCGCGGgGCuCGgugucgggcGGUCcgCGGCGGCc -3'
miRNA:   3'- gGCGCUgCG-GCa--------CCAGuaGCCGUUGc -5'
8996 3' -57 NC_002512.2 + 116712 0.66 0.942394
Target:  5'- aCgGCGACGCCGgucGcGUCccgccCGGCcGCGg -3'
miRNA:   3'- -GgCGCUGCGGCa--C-CAGua---GCCGuUGC- -5'
8996 3' -57 NC_002512.2 + 8545 0.66 0.954468
Target:  5'- gCgGCGAgGCCGcGGUC-UCGGauccACGg -3'
miRNA:   3'- -GgCGCUgCGGCaCCAGuAGCCgu--UGC- -5'
8996 3' -57 NC_002512.2 + 2038 0.66 0.946628
Target:  5'- -aGCGACaGCag-GGUgAUCGGCuGCGg -3'
miRNA:   3'- ggCGCUG-CGgcaCCAgUAGCCGuUGC- -5'
8996 3' -57 NC_002512.2 + 75228 0.66 0.950652
Target:  5'- gCC-CGACGUCGgacGGUCGcUCGGgaCGGCGg -3'
miRNA:   3'- -GGcGCUGCGGCa--CCAGU-AGCC--GUUGC- -5'
8996 3' -57 NC_002512.2 + 21222 0.66 0.946628
Target:  5'- cCCGgGACGCCGcccgGGgCGgagaCGGgGGCGg -3'
miRNA:   3'- -GGCgCUGCGGCa---CCaGUa---GCCgUUGC- -5'
8996 3' -57 NC_002512.2 + 118941 0.66 0.946628
Target:  5'- aCCGCGA-GCucgaggggagCGUGGgg--CGGCGGCGg -3'
miRNA:   3'- -GGCGCUgCG----------GCACCaguaGCCGUUGC- -5'
8996 3' -57 NC_002512.2 + 91308 0.66 0.946628
Target:  5'- gCCGCGAucCGCagCGUGGUCu---GCGACGc -3'
miRNA:   3'- -GGCGCU--GCG--GCACCAGuagcCGUUGC- -5'
8996 3' -57 NC_002512.2 + 194447 0.66 0.944113
Target:  5'- uCUGCGAccaguuucucuggaaCGCgaGUGGUCcUCGGCAAa- -3'
miRNA:   3'- -GGCGCU---------------GCGg-CACCAGuAGCCGUUgc -5'
8996 3' -57 NC_002512.2 + 72869 0.66 0.952203
Target:  5'- gCCGCGuCGCCGUuGUCG-CGgggcucgggcccgaaGCGGCGg -3'
miRNA:   3'- -GGCGCuGCGGCAcCAGUaGC---------------CGUUGC- -5'
8996 3' -57 NC_002512.2 + 79479 0.66 0.954468
Target:  5'- aCCGCG-CGcCCGUGGgcgguUCGGgGAgGg -3'
miRNA:   3'- -GGCGCuGC-GGCACCagu--AGCCgUUgC- -5'
8996 3' -57 NC_002512.2 + 134755 0.66 0.946628
Target:  5'- gCCGgGGCGgaCCGUccGGuUCGUCGGCGGg- -3'
miRNA:   3'- -GGCgCUGC--GGCA--CC-AGUAGCCGUUgc -5'
8996 3' -57 NC_002512.2 + 123662 0.66 0.94496
Target:  5'- gCCGCGGCgGCCGggcucggggaagcGGUCcGUC-GCGGCGg -3'
miRNA:   3'- -GGCGCUG-CGGCa------------CCAG-UAGcCGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.