miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8996 3' -57 NC_002512.2 + 128106 0.71 0.734857
Target:  5'- uCCGCcgucgaggacGGCGCCGUcucgccgaaGGUCAggCGGCGGCu -3'
miRNA:   3'- -GGCG----------CUGCGGCA---------CCAGUa-GCCGUUGc -5'
8996 3' -57 NC_002512.2 + 67772 0.73 0.648935
Target:  5'- uCUcCGGCGCCGgGGUCGUCGGUGAg- -3'
miRNA:   3'- -GGcGCUGCGGCaCCAGUAGCCGUUgc -5'
8996 3' -57 NC_002512.2 + 125381 0.73 0.648935
Target:  5'- aCCGCGuaGCgGCCcUGGaacaggCGUCGGCAGCGg -3'
miRNA:   3'- -GGCGC--UG-CGGcACCa-----GUAGCCGUUGC- -5'
8996 3' -57 NC_002512.2 + 228030 0.72 0.675059
Target:  5'- gUCGCGAgCGCCGUGaUCGUCaugaucacggugguGGCAGCa -3'
miRNA:   3'- -GGCGCU-GCGGCACcAGUAG--------------CCGUUGc -5'
8996 3' -57 NC_002512.2 + 4394 0.72 0.686604
Target:  5'- cCCGCGGCGgccCCGUagaucgcGGUCGaCGGCGGCu -3'
miRNA:   3'- -GGCGCUGC---GGCA-------CCAGUaGCCGUUGc -5'
8996 3' -57 NC_002512.2 + 2187 0.72 0.706659
Target:  5'- aCCGCGcccccgcCGCCGUcgucgucucGGUCGcCGGCGGCGc -3'
miRNA:   3'- -GGCGCu------GCGGCA---------CCAGUaGCCGUUGC- -5'
8996 3' -57 NC_002512.2 + 133675 0.72 0.725528
Target:  5'- gCCGCGGcCGCCGUGGcCGaccucgCGGCcGCc -3'
miRNA:   3'- -GGCGCU-GCGGCACCaGUa-----GCCGuUGc -5'
8996 3' -57 NC_002512.2 + 95370 0.71 0.734857
Target:  5'- gCGgGACGCCGacGUCGacgUCGGCGugGu -3'
miRNA:   3'- gGCgCUGCGGCacCAGU---AGCCGUugC- -5'
8996 3' -57 NC_002512.2 + 122039 0.71 0.734857
Target:  5'- cUCGCGcACGCCcggGGcggCGUCGGCGGCu -3'
miRNA:   3'- -GGCGC-UGCGGca-CCa--GUAGCCGUUGc -5'
8996 3' -57 NC_002512.2 + 104785 0.73 0.639231
Target:  5'- gCGCGugGCgG-GGUCcgCGcGCGGCGg -3'
miRNA:   3'- gGCGCugCGgCaCCAGuaGC-CGUUGC- -5'
8996 3' -57 NC_002512.2 + 134389 0.74 0.619812
Target:  5'- uCCGgGACGUCGUGuGgaugCGGCGGCGg -3'
miRNA:   3'- -GGCgCUGCGGCAC-CaguaGCCGUUGC- -5'
8996 3' -57 NC_002512.2 + 226394 0.74 0.610112
Target:  5'- cCUGCGACGCag-GaGUCggCGGCGACGa -3'
miRNA:   3'- -GGCGCUGCGgcaC-CAGuaGCCGUUGC- -5'
8996 3' -57 NC_002512.2 + 75141 0.8 0.311967
Target:  5'- aCCGCGACGCCGUcGGaCG-CGGCcGCGg -3'
miRNA:   3'- -GGCGCUGCGGCA-CCaGUaGCCGuUGC- -5'
8996 3' -57 NC_002512.2 + 139253 0.78 0.401461
Target:  5'- gCCGCGGCGCCG-GGUCGcgccgccCGGCGcGCGg -3'
miRNA:   3'- -GGCGCUGCGGCaCCAGUa------GCCGU-UGC- -5'
8996 3' -57 NC_002512.2 + 59282 0.77 0.432163
Target:  5'- uCCGUGACGUCGUgcucgacggacucgGGUCGggacaCGGCGACGg -3'
miRNA:   3'- -GGCGCUGCGGCA--------------CCAGUa----GCCGUUGC- -5'
8996 3' -57 NC_002512.2 + 80652 0.77 0.460669
Target:  5'- gCgGCGGCGCCGgguccgucGGUCccgCGGCGGCGg -3'
miRNA:   3'- -GgCGCUGCGGCa-------CCAGua-GCCGUUGC- -5'
8996 3' -57 NC_002512.2 + 155366 0.76 0.505662
Target:  5'- -aGCGGCGCuCGaGGUCGgggCGGCGGCGc -3'
miRNA:   3'- ggCGCUGCG-GCaCCAGUa--GCCGUUGC- -5'
8996 3' -57 NC_002512.2 + 4876 0.74 0.571523
Target:  5'- gUGCGGCGCCGgcUGGagGagCGGCGACGg -3'
miRNA:   3'- gGCGCUGCGGC--ACCagUa-GCCGUUGC- -5'
8996 3' -57 NC_002512.2 + 79065 0.74 0.590763
Target:  5'- gCGCGGCGCgGUcGUCA-CGGCGACc -3'
miRNA:   3'- gGCGCUGCGgCAcCAGUaGCCGUUGc -5'
8996 3' -57 NC_002512.2 + 106181 0.74 0.600427
Target:  5'- aCgGCGACGCCG-GGUCcuucggGUUGGCGAUc -3'
miRNA:   3'- -GgCGCUGCGGCaCCAG------UAGCCGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.