Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8997 | 3' | -61.3 | NC_002512.2 | + | 108715 | 0.68 | 0.690118 |
Target: 5'- cGUCGUCCGagaacgccucGC-CCUGGGCcgcgGCCgGCGUc -3' miRNA: 3'- -CAGCAGGC----------CGuGGACCUG----CGGaCGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 78611 | 0.68 | 0.686313 |
Target: 5'- uUCGUCCGGCGCCaucuUGGAUgacucacgGCCgaccgagaugaugGCGUc -3' miRNA: 3'- cAGCAGGCCGUGG----ACCUG--------CGGa------------CGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 67767 | 0.68 | 0.680594 |
Target: 5'- gGUCGucUCCGGCGCCgGGGuCGUCgGUGa -3' miRNA: 3'- -CAGC--AGGCCGUGGaCCU-GCGGaCGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 223176 | 0.68 | 0.674862 |
Target: 5'- uUCGUCUGGUACgUGGACggGCCgcccgacggggacgGCGUc -3' miRNA: 3'- cAGCAGGCCGUGgACCUG--CGGa-------------CGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 91475 | 0.68 | 0.671034 |
Target: 5'- --gGUCaGGUACUUGGugGCCcGCGg -3' miRNA: 3'- cagCAGgCCGUGGACCugCGGaCGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 96799 | 0.68 | 0.671034 |
Target: 5'- aGUCG-CUGGCGCCaaccGGAcccacCGCCUGCa- -3' miRNA: 3'- -CAGCaGGCCGUGGa---CCU-----GCGGACGca -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 119535 | 0.68 | 0.671034 |
Target: 5'- gGUCGUCCGaGCugUUGGccCGCUUGgCGg -3' miRNA: 3'- -CAGCAGGC-CGugGACCu-GCGGAC-GCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 149878 | 0.68 | 0.670077 |
Target: 5'- cUCGUCCGGCuccggcugccgcuGCCUGGACcUCcGCGc -3' miRNA: 3'- cAGCAGGCCG-------------UGGACCUGcGGaCGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 145966 | 0.68 | 0.661447 |
Target: 5'- -gCGcCgGGCGCugCUGGACGCCUGgGc -3' miRNA: 3'- caGCaGgCCGUG--GACCUGCGGACgCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 113903 | 0.68 | 0.655684 |
Target: 5'- aUCGUCCGggggaccucgcgccGCACCUGGuagaagugcaccagGCGCCUagucGCGUu -3' miRNA: 3'- cAGCAGGC--------------CGUGGACC--------------UGCGGA----CGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 156810 | 0.68 | 0.651838 |
Target: 5'- cGUCGUgcacucggUCGGCaACCUGugcGAgGCCUGCGg -3' miRNA: 3'- -CAGCA--------GGCCG-UGGAC---CUgCGGACGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 107805 | 0.68 | 0.651838 |
Target: 5'- -gCGUCCGGCGCgUGcGGCagccacuucaGCCUGCu- -3' miRNA: 3'- caGCAGGCCGUGgAC-CUG----------CGGACGca -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 211443 | 0.69 | 0.632587 |
Target: 5'- -cUGcCCGGaGCUcGGGCGCCUGCGg -3' miRNA: 3'- caGCaGGCCgUGGaCCUGCGGACGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 13391 | 0.69 | 0.622957 |
Target: 5'- uUCGUCCGcUACCU-GACGCgCUGCGc -3' miRNA: 3'- cAGCAGGCcGUGGAcCUGCG-GACGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 114015 | 0.69 | 0.620069 |
Target: 5'- cGUCGUCCGGCgggcccGCCUcGGcgaACGCCUcgaggcaggggcccGCGUc -3' miRNA: 3'- -CAGCAGGCCG------UGGA-CC---UGCGGA--------------CGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 100323 | 0.69 | 0.603723 |
Target: 5'- -aCGUcCCGGCGCCUcgggacuggcGGGCGCCgGCc- -3' miRNA: 3'- caGCA-GGCCGUGGA----------CCUGCGGaCGca -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 95995 | 0.69 | 0.59413 |
Target: 5'- -gCGUCCGGCGCC-GcGAcCGCCagGCGg -3' miRNA: 3'- caGCAGGCCGUGGaC-CU-GCGGa-CGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 72791 | 0.69 | 0.59413 |
Target: 5'- cGUCG-CCGGgacgggccCGCCgUGGGCGCCgGCGa -3' miRNA: 3'- -CAGCaGGCC--------GUGG-ACCUGCGGaCGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 215468 | 0.69 | 0.584563 |
Target: 5'- aUCG-CCGGCGucgacuccuCCUGG-CGCCUGCu- -3' miRNA: 3'- cAGCaGGCCGU---------GGACCuGCGGACGca -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 170646 | 0.69 | 0.584563 |
Target: 5'- -cCG-CCGGCGCCU---CGCCUGCGg -3' miRNA: 3'- caGCaGGCCGUGGAccuGCGGACGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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