miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8997 3' -61.3 NC_002512.2 + 96799 0.68 0.671034
Target:  5'- aGUCG-CUGGCGCCaaccGGAcccacCGCCUGCa- -3'
miRNA:   3'- -CAGCaGGCCGUGGa---CCU-----GCGGACGca -5'
8997 3' -61.3 NC_002512.2 + 100323 0.69 0.603723
Target:  5'- -aCGUcCCGGCGCCUcgggacuggcGGGCGCCgGCc- -3'
miRNA:   3'- caGCA-GGCCGUGGA----------CCUGCGGaCGca -5'
8997 3' -61.3 NC_002512.2 + 101615 0.71 0.500443
Target:  5'- cGUCGgcCCGGCGCCgGGACGCgaGUc- -3'
miRNA:   3'- -CAGCa-GGCCGUGGaCCUGCGgaCGca -5'
8997 3' -61.3 NC_002512.2 + 102364 0.68 0.690118
Target:  5'- gGUCGUCCGGagguCCUGGA-GCCgGaCGa -3'
miRNA:   3'- -CAGCAGGCCgu--GGACCUgCGGaC-GCa -5'
8997 3' -61.3 NC_002512.2 + 105135 0.67 0.6996
Target:  5'- cGUCGUCgCcGCACCcgacGGACGCC-GUGUa -3'
miRNA:   3'- -CAGCAG-GcCGUGGa---CCUGCGGaCGCA- -5'
8997 3' -61.3 NC_002512.2 + 107805 0.68 0.651838
Target:  5'- -gCGUCCGGCGCgUGcGGCagccacuucaGCCUGCu- -3'
miRNA:   3'- caGCAGGCCGUGgAC-CUG----------CGGACGca -5'
8997 3' -61.3 NC_002512.2 + 108715 0.68 0.690118
Target:  5'- cGUCGUCCGagaacgccucGC-CCUGGGCcgcgGCCgGCGUc -3'
miRNA:   3'- -CAGCAGGC----------CGuGGACCUG----CGGaCGCA- -5'
8997 3' -61.3 NC_002512.2 + 113903 0.68 0.655684
Target:  5'- aUCGUCCGggggaccucgcgccGCACCUGGuagaagugcaccagGCGCCUagucGCGUu -3'
miRNA:   3'- cAGCAGGC--------------CGUGGACC--------------UGCGGA----CGCA- -5'
8997 3' -61.3 NC_002512.2 + 114015 0.69 0.620069
Target:  5'- cGUCGUCCGGCgggcccGCCUcGGcgaACGCCUcgaggcaggggcccGCGUc -3'
miRNA:   3'- -CAGCAGGCCG------UGGA-CC---UGCGGA--------------CGCA- -5'
8997 3' -61.3 NC_002512.2 + 115081 0.67 0.709031
Target:  5'- cGUCG-CgCGGCGCCUGGcCaCCcGCGUg -3'
miRNA:   3'- -CAGCaG-GCCGUGGACCuGcGGaCGCA- -5'
8997 3' -61.3 NC_002512.2 + 118538 0.66 0.790395
Target:  5'- gGUCGUCCucgugcGCGCCcgGGACGCCaacaacgGCa- -3'
miRNA:   3'- -CAGCAGGc-----CGUGGa-CCUGCGGa------CGca -5'
8997 3' -61.3 NC_002512.2 + 119535 0.68 0.671034
Target:  5'- gGUCGUCCGaGCugUUGGccCGCUUGgCGg -3'
miRNA:   3'- -CAGCAGGC-CGugGACCu-GCGGAC-GCa -5'
8997 3' -61.3 NC_002512.2 + 121923 0.66 0.798905
Target:  5'- uUCGcCCuGGC-CCUGGACGCCauCGa -3'
miRNA:   3'- cAGCaGG-CCGuGGACCUGCGGacGCa -5'
8997 3' -61.3 NC_002512.2 + 124278 0.72 0.447416
Target:  5'- -aCGgCCGGUGCCUcGGCGCCUGCa- -3'
miRNA:   3'- caGCaGGCCGUGGAcCUGCGGACGca -5'
8997 3' -61.3 NC_002512.2 + 124618 0.66 0.773004
Target:  5'- cGUCGgcggcgUCGGCGCCUGGAU-CCgggUGCGc -3'
miRNA:   3'- -CAGCa-----GGCCGUGGACCUGcGG---ACGCa -5'
8997 3' -61.3 NC_002512.2 + 124997 0.67 0.746103
Target:  5'- cGUCGgagugcaUCGGgGCCagGGACGCCcGCGg -3'
miRNA:   3'- -CAGCa------GGCCgUGGa-CCUGCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 130628 0.67 0.6996
Target:  5'- -gCGUCCGGCGuCCUcgGGGCGUcccucgacuuCUGCGc -3'
miRNA:   3'- caGCAGGCCGU-GGA--CCUGCG----------GACGCa -5'
8997 3' -61.3 NC_002512.2 + 131081 0.7 0.537288
Target:  5'- cGUCGcUCCGGCcgccgggguACCUGGACGUggUGCGc -3'
miRNA:   3'- -CAGC-AGGCCG---------UGGACCUGCGg-ACGCa -5'
8997 3' -61.3 NC_002512.2 + 131228 0.66 0.755168
Target:  5'- -aCGUCgCGGUcggagGCCgcGGugGCCUGCa- -3'
miRNA:   3'- caGCAG-GCCG-----UGGa-CCugCGGACGca -5'
8997 3' -61.3 NC_002512.2 + 133897 0.68 0.690118
Target:  5'- --gGUCgCGGCGCC-GGACGCCgaccgccgcUGCGc -3'
miRNA:   3'- cagCAG-GCCGUGGaCCUGCGG---------ACGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.