miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8997 3' -61.3 NC_002512.2 + 1298 0.66 0.773004
Target:  5'- --gGUCCGGCGCCUGc-CGCCgacacgaccGCGg -3'
miRNA:   3'- cagCAGGCCGUGGACcuGCGGa--------CGCa -5'
8997 3' -61.3 NC_002512.2 + 3139 0.67 0.707149
Target:  5'- cGUCGUCCGGCcggaGCCcGGucccgccgucguCGCCcGCGg -3'
miRNA:   3'- -CAGCAGGCCG----UGGaCCu-----------GCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 8857 0.67 0.736948
Target:  5'- -cCGggCGGCACCccguUGGugGCC-GCGUg -3'
miRNA:   3'- caGCagGCCGUGG----ACCugCGGaCGCA- -5'
8997 3' -61.3 NC_002512.2 + 13391 0.69 0.622957
Target:  5'- uUCGUCCGcUACCU-GACGCgCUGCGc -3'
miRNA:   3'- cAGCAGGCcGUGGAcCUGCG-GACGCa -5'
8997 3' -61.3 NC_002512.2 + 23752 0.7 0.54665
Target:  5'- -cCGUCUGGCgACC-GGACGCCccgcUGCGc -3'
miRNA:   3'- caGCAGGCCG-UGGaCCUGCGG----ACGCa -5'
8997 3' -61.3 NC_002512.2 + 24445 0.66 0.764139
Target:  5'- cGUCGUCCGaacGCACggugGGGCGCCUcuuaGCa- -3'
miRNA:   3'- -CAGCAGGC---CGUGga--CCUGCGGA----CGca -5'
8997 3' -61.3 NC_002512.2 + 49836 0.75 0.302812
Target:  5'- gGUCGUCCGGCACCcGcacCGCCUGgGa -3'
miRNA:   3'- -CAGCAGGCCGUGGaCcu-GCGGACgCa -5'
8997 3' -61.3 NC_002512.2 + 54405 0.67 0.718405
Target:  5'- -aCGUgCGGaacguCCUGGACGgCCUGCu- -3'
miRNA:   3'- caGCAgGCCgu---GGACCUGC-GGACGca -5'
8997 3' -61.3 NC_002512.2 + 55231 0.7 0.54665
Target:  5'- aUCGUgCGGCACCUGGAgaacgUGCCgGaCGa -3'
miRNA:   3'- cAGCAgGCCGUGGACCU-----GCGGaC-GCa -5'
8997 3' -61.3 NC_002512.2 + 57046 0.66 0.773004
Target:  5'- -gCGUCCGaCgACCgggGGGCGCCggGCGa -3'
miRNA:   3'- caGCAGGCcG-UGGa--CCUGCGGa-CGCa -5'
8997 3' -61.3 NC_002512.2 + 58669 0.66 0.787817
Target:  5'- aGUCGaaagaUCCGGCGCgUGuugaaaaccagaucGGCGCCcGCGUu -3'
miRNA:   3'- -CAGC-----AGGCCGUGgAC--------------CUGCGGaCGCA- -5'
8997 3' -61.3 NC_002512.2 + 67767 0.68 0.680594
Target:  5'- gGUCGucUCCGGCGCCgGGGuCGUCgGUGa -3'
miRNA:   3'- -CAGC--AGGCCGUGGaCCU-GCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 72791 0.69 0.59413
Target:  5'- cGUCG-CCGGgacgggccCGCCgUGGGCGCCgGCGa -3'
miRNA:   3'- -CAGCaGGCC--------GUGG-ACCUGCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 74554 0.67 0.6996
Target:  5'- cGUCuGUCUGGUccgccgcgACCUGGGCGCuCUG-GUg -3'
miRNA:   3'- -CAG-CAGGCCG--------UGGACCUGCG-GACgCA- -5'
8997 3' -61.3 NC_002512.2 + 78611 0.68 0.686313
Target:  5'- uUCGUCCGGCGCCaucuUGGAUgacucacgGCCgaccgagaugaugGCGUc -3'
miRNA:   3'- cAGCAGGCCGUGG----ACCUG--------CGGa------------CGCA- -5'
8997 3' -61.3 NC_002512.2 + 84788 0.7 0.565524
Target:  5'- uGUCGgCCGGCAgCcGcGACGCCUcGCGg -3'
miRNA:   3'- -CAGCaGGCCGUgGaC-CUGCGGA-CGCa -5'
8997 3' -61.3 NC_002512.2 + 91475 0.68 0.671034
Target:  5'- --gGUCaGGUACUUGGugGCCcGCGg -3'
miRNA:   3'- cagCAGgCCGUGGACCugCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 92971 0.73 0.405703
Target:  5'- aGUCgGUCCGGCugacgucgcccgACCUGGugGCCgucucggugGCGg -3'
miRNA:   3'- -CAG-CAGGCCG------------UGGACCugCGGa--------CGCa -5'
8997 3' -61.3 NC_002512.2 + 95017 0.66 0.763246
Target:  5'- cGUCGUCCGGgGCagggGGGCGgUcaggcugUGCGUg -3'
miRNA:   3'- -CAGCAGGCCgUGga--CCUGCgG-------ACGCA- -5'
8997 3' -61.3 NC_002512.2 + 95995 0.69 0.59413
Target:  5'- -gCGUCCGGCGCC-GcGAcCGCCagGCGg -3'
miRNA:   3'- caGCAGGCCGUGGaC-CU-GCGGa-CGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.