miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8997 3' -61.3 NC_002512.2 + 186008 1.06 0.002557
Target:  5'- gGUCGUCCGGCACCUGGACGCCUGCGUc -3'
miRNA:   3'- -CAGCAGGCCGUGGACCUGCGGACGCA- -5'
8997 3' -61.3 NC_002512.2 + 210966 0.78 0.183541
Target:  5'- gGUCGUCCgGGC-CCUGuGucGCGCCUGCGUg -3'
miRNA:   3'- -CAGCAGG-CCGuGGAC-C--UGCGGACGCA- -5'
8997 3' -61.3 NC_002512.2 + 135254 0.76 0.253067
Target:  5'- cGUCGUCCGcGCcgcgcucgacgagGCCUGGGcCGCCUGCu- -3'
miRNA:   3'- -CAGCAGGC-CG-------------UGGACCU-GCGGACGca -5'
8997 3' -61.3 NC_002512.2 + 49836 0.75 0.302812
Target:  5'- gGUCGUCCGGCACCcGcacCGCCUGgGa -3'
miRNA:   3'- -CAGCAGGCCGUGGaCcu-GCGGACgCa -5'
8997 3' -61.3 NC_002512.2 + 173339 0.74 0.359006
Target:  5'- uUCGgucCCGGCacgcGCCUGGACGuCCUGCu- -3'
miRNA:   3'- cAGCa--GGCCG----UGGACCUGC-GGACGca -5'
8997 3' -61.3 NC_002512.2 + 213970 0.74 0.359006
Target:  5'- -cCGUCgGGCACCUGGAUaUCUGUGg -3'
miRNA:   3'- caGCAGgCCGUGGACCUGcGGACGCa -5'
8997 3' -61.3 NC_002512.2 + 92971 0.73 0.405703
Target:  5'- aGUCgGUCCGGCugacgucgcccgACCUGGugGCCgucucggugGCGg -3'
miRNA:   3'- -CAG-CAGGCCG------------UGGACCugCGGa--------CGCa -5'
8997 3' -61.3 NC_002512.2 + 124278 0.72 0.447416
Target:  5'- -aCGgCCGGUGCCUcGGCGCCUGCa- -3'
miRNA:   3'- caGCaGGCCGUGGAcCUGCGGACGca -5'
8997 3' -61.3 NC_002512.2 + 193953 0.71 0.473557
Target:  5'- cGUCGUCUGGCGCgaGaGGcCGCCgGCGa -3'
miRNA:   3'- -CAGCAGGCCGUGgaC-CU-GCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 101615 0.71 0.500443
Target:  5'- cGUCGgcCCGGCGCCgGGACGCgaGUc- -3'
miRNA:   3'- -CAGCa-GGCCGUGGaCCUGCGgaCGca -5'
8997 3' -61.3 NC_002512.2 + 221779 0.7 0.537288
Target:  5'- cGUCGUgucCUGGCGCCUGcucuACGCCgGCGa -3'
miRNA:   3'- -CAGCA---GGCCGUGGACc---UGCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 201847 0.7 0.537288
Target:  5'- -gCGgCCGGCagcucGCCUGGG-GCCUGCGg -3'
miRNA:   3'- caGCaGGCCG-----UGGACCUgCGGACGCa -5'
8997 3' -61.3 NC_002512.2 + 131081 0.7 0.537288
Target:  5'- cGUCGcUCCGGCcgccgggguACCUGGACGUggUGCGc -3'
miRNA:   3'- -CAGC-AGGCCG---------UGGACCUGCGg-ACGCa -5'
8997 3' -61.3 NC_002512.2 + 216223 0.7 0.54665
Target:  5'- cUCGUCCGGgAgCUGGA-GCCgcgGCGa -3'
miRNA:   3'- cAGCAGGCCgUgGACCUgCGGa--CGCa -5'
8997 3' -61.3 NC_002512.2 + 55231 0.7 0.54665
Target:  5'- aUCGUgCGGCACCUGGAgaacgUGCCgGaCGa -3'
miRNA:   3'- cAGCAgGCCGUGGACCU-----GCGGaC-GCa -5'
8997 3' -61.3 NC_002512.2 + 23752 0.7 0.54665
Target:  5'- -cCGUCUGGCgACC-GGACGCCccgcUGCGc -3'
miRNA:   3'- caGCAGGCCG-UGGaCCUGCGG----ACGCa -5'
8997 3' -61.3 NC_002512.2 + 84788 0.7 0.565524
Target:  5'- uGUCGgCCGGCAgCcGcGACGCCUcGCGg -3'
miRNA:   3'- -CAGCaGGCCGUgGaC-CUGCGGA-CGCa -5'
8997 3' -61.3 NC_002512.2 + 154442 0.69 0.575025
Target:  5'- cUUGUCCGGCGCCgucgacGGugcguuccccuCGCCUGUGg -3'
miRNA:   3'- cAGCAGGCCGUGGa-----CCu----------GCGGACGCa -5'
8997 3' -61.3 NC_002512.2 + 220518 0.69 0.575025
Target:  5'- cGUCGcCCGGgACCUGGAgGagcugCUGCGc -3'
miRNA:   3'- -CAGCaGGCCgUGGACCUgCg----GACGCa -5'
8997 3' -61.3 NC_002512.2 + 215468 0.69 0.584563
Target:  5'- aUCG-CCGGCGucgacuccuCCUGG-CGCCUGCu- -3'
miRNA:   3'- cAGCaGGCCGU---------GGACCuGCGGACGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.