Results 21 - 40 of 439 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8998 | 3' | -59.2 | NC_002512.2 | + | 2199 | 0.66 | 0.892228 |
Target: 5'- cCGCCGucgucGUCuCGGUCGcCGGCgGcgCCg -3' miRNA: 3'- -GCGGCuu---UAG-GCCAGCcGCCGgCa-GG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 109362 | 0.66 | 0.900777 |
Target: 5'- cCGCCGggGgaaagCCGcgccuccccgucaccGcgaUCGGCGGCguCGUCCc -3' miRNA: 3'- -GCGGCuuUa----GGC---------------C---AGCCGCCG--GCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 151894 | 0.66 | 0.904319 |
Target: 5'- cCGCgGAucguuUCCGGUaGGCauGCCGUCg -3' miRNA: 3'- -GCGgCUuu---AGGCCAgCCGc-CGGCAGg -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 127560 | 0.66 | 0.910058 |
Target: 5'- gGCuCGucGUCCGGgaggccCGaCGGaCCGUCCg -3' miRNA: 3'- gCG-GCuuUAGGCCa-----GCcGCC-GGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 22072 | 0.66 | 0.898374 |
Target: 5'- aCGCCG-AGUCgGGguUCGGaGaGCuCGUCCg -3' miRNA: 3'- -GCGGCuUUAGgCC--AGCCgC-CG-GCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 104993 | 0.66 | 0.897769 |
Target: 5'- aCGCCGAa---CGGUCGccgugacGgGGCCG-CCg -3' miRNA: 3'- -GCGGCUuuagGCCAGC-------CgCCGGCaGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 6097 | 0.66 | 0.904319 |
Target: 5'- cCGCCGAcGUCCc--CGGCGa-CGUCCg -3' miRNA: 3'- -GCGGCUuUAGGccaGCCGCcgGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 10471 | 0.66 | 0.897161 |
Target: 5'- cCGCCGcc--CCGGgcgugggcgucgCGGCGGgCCGaCCa -3' miRNA: 3'- -GCGGCuuuaGGCCa-----------GCCGCC-GGCaGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 113318 | 0.66 | 0.892228 |
Target: 5'- gGCCaGGAGgggCUcGUCgcacaGGCGGCCGUUCa -3' miRNA: 3'- gCGG-CUUUa--GGcCAG-----CCGCCGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 24219 | 0.66 | 0.892228 |
Target: 5'- aCGCCGGAgcuGUCCGaggcGUCGGgcccgccgaCGG-CGUCCc -3' miRNA: 3'- -GCGGCUU---UAGGC----CAGCC---------GCCgGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 198712 | 0.66 | 0.910058 |
Target: 5'- aCGUCGAGGUCaccaGG-CGGUgcgucucccgGGCCagGUCCg -3' miRNA: 3'- -GCGGCUUUAGg---CCaGCCG----------CCGG--CAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 83751 | 0.66 | 0.908358 |
Target: 5'- uGCCGAucuUCCGG-CGGCaggugcagaagacgGcGCCG-CCg -3' miRNA: 3'- gCGGCUuu-AGGCCaGCCG--------------C-CGGCaGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 88865 | 0.66 | 0.910058 |
Target: 5'- cCGCuCGAucUCgGcucuGUCGGUcGCCGUCCu -3' miRNA: 3'- -GCG-GCUuuAGgC----CAGCCGcCGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 124632 | 0.66 | 0.910058 |
Target: 5'- gCGCCuGGAUCCGGgugcgCGGCGcGgCGcUCa -3' miRNA: 3'- -GCGGcUUUAGGCCa----GCCGC-CgGC-AGg -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 38390 | 0.66 | 0.910058 |
Target: 5'- gGaaGGGAgcgcgCCGGUCGcCGcGCUGUCCg -3' miRNA: 3'- gCggCUUUa----GGCCAGCcGC-CGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 89335 | 0.66 | 0.908927 |
Target: 5'- -uUCGAGGUagaggaccagaaCGGcgucgaGGCGGCCGUCCu -3' miRNA: 3'- gcGGCUUUAg-----------GCCag----CCGCCGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 30663 | 0.66 | 0.87934 |
Target: 5'- gCGCCGGAucuaCCGGgCGGC-GCgGUCg -3' miRNA: 3'- -GCGGCUUua--GGCCaGCCGcCGgCAGg -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 29909 | 0.66 | 0.898374 |
Target: 5'- cCGCCGGGcgCgCGGacgCGGCGGgaGUgCa -3' miRNA: 3'- -GCGGCUUuaG-GCCa--GCCGCCggCAgG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 172014 | 0.66 | 0.910058 |
Target: 5'- cCGCCGucgccuGGUCCGGcCGGCaGCaugCGcCCc -3' miRNA: 3'- -GCGGCu-----UUAGGCCaGCCGcCG---GCaGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 44520 | 0.66 | 0.908358 |
Target: 5'- cCGCCGAAgguGUCgcagucgacggcgaUGG-CGGCGGCCacCCg -3' miRNA: 3'- -GCGGCUU---UAG--------------GCCaGCCGCCGGcaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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