Results 1 - 20 of 439 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8998 | 3' | -59.2 | NC_002512.2 | + | 83106 | 0.66 | 0.885882 |
Target: 5'- gGuCCGGcGGUCCGGcgUCGGUcgGGUCGUCg -3' miRNA: 3'- gC-GGCU-UUAGGCC--AGCCG--CCGGCAGg -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 113318 | 0.66 | 0.892228 |
Target: 5'- gGCCaGGAGgggCUcGUCgcacaGGCGGCCGUUCa -3' miRNA: 3'- gCGG-CUUUa--GGcCAG-----CCGCCGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 24219 | 0.66 | 0.892228 |
Target: 5'- aCGCCGGAgcuGUCCGaggcGUCGGgcccgccgaCGG-CGUCCc -3' miRNA: 3'- -GCGGCUU---UAGGC----CAGCC---------GCCgGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 116975 | 0.66 | 0.898374 |
Target: 5'- cCGCCGAcgccccGUCCGGgCGGgccgaCGGCCG-Ca -3' miRNA: 3'- -GCGGCUu-----UAGGCCaGCC-----GCCGGCaGg -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 74169 | 0.66 | 0.88198 |
Target: 5'- cCGCuCGGGAUCCaGGUgGaggcgccggcacaggGCGGCgaCGUCCg -3' miRNA: 3'- -GCG-GCUUUAGG-CCAgC---------------CGCCG--GCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 30663 | 0.66 | 0.87934 |
Target: 5'- gCGCCGGAucuaCCGGgCGGC-GCgGUCg -3' miRNA: 3'- -GCGGCUUua--GGCCaGCCGcCGgCAGg -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 104993 | 0.66 | 0.897769 |
Target: 5'- aCGCCGAa---CGGUCGccgugacGgGGCCG-CCg -3' miRNA: 3'- -GCGGCUuuagGCCAGC-------CgCCGGCaGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 2199 | 0.66 | 0.892228 |
Target: 5'- cCGCCGucgucGUCuCGGUCGcCGGCgGcgCCg -3' miRNA: 3'- -GCGGCuu---UAG-GCCAGCcGCCGgCa-GG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 31711 | 0.66 | 0.892228 |
Target: 5'- uCGCCGAcgugGAgguccgCCGGcCGGCG-CCGaCCc -3' miRNA: 3'- -GCGGCU----UUa-----GGCCaGCCGCcGGCaGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 100052 | 0.66 | 0.892228 |
Target: 5'- gCGCUGAGAcgCGGgggCGGCGGCg--CCg -3' miRNA: 3'- -GCGGCUUUagGCCa--GCCGCCGgcaGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 62595 | 0.66 | 0.87934 |
Target: 5'- uCGCgGAAcagGUCgCGGgugaCGGCGGCgG-CCa -3' miRNA: 3'- -GCGgCUU---UAG-GCCa---GCCGCCGgCaGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 196745 | 0.66 | 0.892228 |
Target: 5'- -uCCG-AGUCCGuGUCaGGCG-CCGUCUg -3' miRNA: 3'- gcGGCuUUAGGC-CAG-CCGCcGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 10471 | 0.66 | 0.897161 |
Target: 5'- cCGCCGcc--CCGGgcgugggcgucgCGGCGGgCCGaCCa -3' miRNA: 3'- -GCGGCuuuaGGCCa-----------GCCGCC-GGCaGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 90899 | 0.66 | 0.885882 |
Target: 5'- uCGuCCGGGAcggCCGGacUGGCGGCCG-Cg -3' miRNA: 3'- -GC-GGCUUUa--GGCCa-GCCGCCGGCaGg -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 3845 | 0.66 | 0.898374 |
Target: 5'- gGCCGAGGUCgCaGUCGuagacggaGCGGacguCGUCCu -3' miRNA: 3'- gCGGCUUUAG-GcCAGC--------CGCCg---GCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 121364 | 0.66 | 0.885882 |
Target: 5'- cCGUCGGGuccccggCCGGUCGG-GcGCCGggcCCg -3' miRNA: 3'- -GCGGCUUua-----GGCCAGCCgC-CGGCa--GG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 22072 | 0.66 | 0.898374 |
Target: 5'- aCGCCG-AGUCgGGguUCGGaGaGCuCGUCCg -3' miRNA: 3'- -GCGGCuUUAGgCC--AGCCgC-CG-GCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 109362 | 0.66 | 0.900777 |
Target: 5'- cCGCCGggGgaaagCCGcgccuccccgucaccGcgaUCGGCGGCguCGUCCc -3' miRNA: 3'- -GCGGCuuUa----GGC---------------C---AGCCGCCG--GCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 101838 | 0.66 | 0.87934 |
Target: 5'- aCGCCGcGA-CC-GUCGG-GGCCGUgCa -3' miRNA: 3'- -GCGGCuUUaGGcCAGCCgCCGGCAgG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 29909 | 0.66 | 0.898374 |
Target: 5'- cCGCCGGGcgCgCGGacgCGGCGGgaGUgCa -3' miRNA: 3'- -GCGGCUUuaG-GCCa--GCCGCCggCAgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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