miRNA display CGI


Results 1 - 20 of 439 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 3' -59.2 NC_002512.2 + 83795 0.74 0.478329
Target:  5'- cCGCCGAggaccgcgucgggcGcgCCGG-CGGCGGCgGcUCCg -3'
miRNA:   3'- -GCGGCU--------------UuaGGCCaGCCGCCGgC-AGG- -5'
8998 3' -59.2 NC_002512.2 + 81367 0.76 0.388959
Target:  5'- gGCCGggG-CgGG-CGGCGGCCG-CCu -3'
miRNA:   3'- gCGGCuuUaGgCCaGCCGCCGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 52410 0.75 0.421097
Target:  5'- gGCCGAGAagCGGUCGGCGGaCCu--- -3'
miRNA:   3'- gCGGCUUUagGCCAGCCGCC-GGcagg -5'
8998 3' -59.2 NC_002512.2 + 71248 0.75 0.429379
Target:  5'- aCGUCGggGUCgaaggGGUCGGa-GCCGUCCa -3'
miRNA:   3'- -GCGGCuuUAGg----CCAGCCgcCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 6675 0.75 0.436913
Target:  5'- gGCCGGGAcgcgcUCCGGgacgccguccccgUCgGGCGGCCcGUCCa -3'
miRNA:   3'- gCGGCUUU-----AGGCC-------------AG-CCGCCGG-CAGG- -5'
8998 3' -59.2 NC_002512.2 + 120761 0.75 0.446225
Target:  5'- aGuCCGAcGUgCUGGacUCGGCGGCCGUCg -3'
miRNA:   3'- gC-GGCUuUA-GGCC--AGCCGCCGGCAGg -5'
8998 3' -59.2 NC_002512.2 + 102216 0.74 0.454785
Target:  5'- uCGCCGcgg-CCGGagCGGCccucgaccGGCCGUCCg -3'
miRNA:   3'- -GCGGCuuuaGGCCa-GCCG--------CCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 196952 0.74 0.454785
Target:  5'- uGCCGAAuugCUGcUCGaCGGCCGUCCa -3'
miRNA:   3'- gCGGCUUua-GGCcAGCcGCCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 89108 0.74 0.463433
Target:  5'- uCGCgCG---UCUGGUCGGCGGUCGUUUg -3'
miRNA:   3'- -GCG-GCuuuAGGCCAGCCGCCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 67728 0.76 0.388959
Target:  5'- gGCCGcuuUCgCGGUCGGCGuGCCGgCCu -3'
miRNA:   3'- gCGGCuuuAG-GCCAGCCGC-CGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 126161 0.76 0.386615
Target:  5'- uCGCCGcgGUCCGGUucaggaucaUGGCGGCgcccccucccgccgCGUCCg -3'
miRNA:   3'- -GCGGCuuUAGGCCA---------GCCGCCG--------------GCAGG- -5'
8998 3' -59.2 NC_002512.2 + 83144 0.77 0.358473
Target:  5'- uCGUCGAGGUCguCGGgccCGGCGGCCGcggCCg -3'
miRNA:   3'- -GCGGCUUUAG--GCCa--GCCGCCGGCa--GG- -5'
8998 3' -59.2 NC_002512.2 + 107091 0.81 0.197391
Target:  5'- gGUCGGG--UCGGUCGGCGGCCcGUCCu -3'
miRNA:   3'- gCGGCUUuaGGCCAGCCGCCGG-CAGG- -5'
8998 3' -59.2 NC_002512.2 + 134726 0.8 0.231357
Target:  5'- gGCCGggGgaaggcUCCGGUCcucgacccgccggGGCGGaCCGUCCg -3'
miRNA:   3'- gCGGCuuU------AGGCCAG-------------CCGCC-GGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 8457 0.8 0.231883
Target:  5'- gGCCGcgGUCCGcaUGGCGGCCGUCg -3'
miRNA:   3'- gCGGCuuUAGGCcaGCCGCCGGCAGg -5'
8998 3' -59.2 NC_002512.2 + 123108 0.8 0.237206
Target:  5'- gGCgGAAccGUCCcgccgccGUCGGCGGCCGUCCc -3'
miRNA:   3'- gCGgCUU--UAGGc------CAGCCGCCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 45318 0.78 0.283532
Target:  5'- uGCCGGcccgCgGGUCGGagGGCCGUCCg -3'
miRNA:   3'- gCGGCUuua-GgCCAGCCg-CCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 29948 0.78 0.315964
Target:  5'- uGCUGGAcagCCGGUgagCGGCGGCCGgCCg -3'
miRNA:   3'- gCGGCUUua-GGCCA---GCCGCCGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 103349 0.77 0.351117
Target:  5'- gCGUCGAcgAGUCCGGggccgCGGUcgGGUCGUCCg -3'
miRNA:   3'- -GCGGCU--UUAGGCCa----GCCG--CCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 128669 0.77 0.351117
Target:  5'- gCGCCGGAAcCCGG-CGGacggGGCCGUCg -3'
miRNA:   3'- -GCGGCUUUaGGCCaGCCg---CCGGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.