Results 1 - 20 of 439 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8998 | 3' | -59.2 | NC_002512.2 | + | 184666 | 1.12 | 0.001929 |
Target: 5'- gCGCCGAAAUCCGGUCGGCGGCCGUCCg -3' miRNA: 3'- -GCGGCUUUAGGCCAGCCGCCGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 134563 | 0.84 | 0.134989 |
Target: 5'- gGCCGAAcauguUCCGGUaCGGCGGCCcgcgGUCCg -3' miRNA: 3'- gCGGCUUu----AGGCCA-GCCGCCGG----CAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 107091 | 0.81 | 0.197391 |
Target: 5'- gGUCGGG--UCGGUCGGCGGCCcGUCCu -3' miRNA: 3'- gCGGCUUuaGGCCAGCCGCCGG-CAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 134726 | 0.8 | 0.231357 |
Target: 5'- gGCCGggGgaaggcUCCGGUCcucgacccgccggGGCGGaCCGUCCg -3' miRNA: 3'- gCGGCuuU------AGGCCAG-------------CCGCC-GGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 8457 | 0.8 | 0.231883 |
Target: 5'- gGCCGcgGUCCGcaUGGCGGCCGUCg -3' miRNA: 3'- gCGGCuuUAGGCcaGCCGCCGGCAGg -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 123108 | 0.8 | 0.237206 |
Target: 5'- gGCgGAAccGUCCcgccgccGUCGGCGGCCGUCCc -3' miRNA: 3'- gCGgCUU--UAGGc------CAGCCGCCGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 217780 | 0.8 | 0.237206 |
Target: 5'- uCGCCGggGUCgCGGccggcuggcggaUCGGCGucGCCGUCCc -3' miRNA: 3'- -GCGGCuuUAG-GCC------------AGCCGC--CGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 98126 | 0.79 | 0.259527 |
Target: 5'- uGCCGggGcgCUGGUCGucGCGGCCGcCCg -3' miRNA: 3'- gCGGCuuUa-GGCCAGC--CGCCGGCaGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 220593 | 0.79 | 0.27737 |
Target: 5'- uGCCGGGAUCCGGUCGuGCGcgagcugguGCUGUgCCg -3' miRNA: 3'- gCGGCUUUAGGCCAGC-CGC---------CGGCA-GG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 194926 | 0.78 | 0.283532 |
Target: 5'- aGCCGGAc-CCGGUC-GCGGCCGcUCCg -3' miRNA: 3'- gCGGCUUuaGGCCAGcCGCCGGC-AGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 45318 | 0.78 | 0.283532 |
Target: 5'- uGCCGGcccgCgGGUCGGagGGCCGUCCg -3' miRNA: 3'- gCGGCUuua-GgCCAGCCg-CCGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 173523 | 0.78 | 0.296179 |
Target: 5'- cCGCCGAuccGUCC-GUCGG-GGCCGUCUg -3' miRNA: 3'- -GCGGCUu--UAGGcCAGCCgCCGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 29948 | 0.78 | 0.315964 |
Target: 5'- uGCUGGAcagCCGGUgagCGGCGGCCGgCCg -3' miRNA: 3'- gCGGCUUua-GGCCA---GCCGCCGGCaGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 227461 | 0.77 | 0.329699 |
Target: 5'- uGCCGggGgagaggCCGGg-GGCGGCCGgCCg -3' miRNA: 3'- gCGGCuuUa-----GGCCagCCGCCGGCaGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 98816 | 0.77 | 0.350388 |
Target: 5'- gGCCGGAGcgacggaucggccUCCGGcgCGGC-GCCGUCCu -3' miRNA: 3'- gCGGCUUU-------------AGGCCa-GCCGcCGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 128669 | 0.77 | 0.351117 |
Target: 5'- gCGCCGGAAcCCGG-CGGacggGGCCGUCg -3' miRNA: 3'- -GCGGCUUUaGGCCaGCCg---CCGGCAGg -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 103349 | 0.77 | 0.351117 |
Target: 5'- gCGUCGAcgAGUCCGGggccgCGGUcgGGUCGUCCg -3' miRNA: 3'- -GCGGCU--UUAGGCCa----GCCG--CCGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 83144 | 0.77 | 0.358473 |
Target: 5'- uCGUCGAGGUCguCGGgccCGGCGGCCGcggCCg -3' miRNA: 3'- -GCGGCUUUAG--GCCa--GCCGCCGGCa--GG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 126161 | 0.76 | 0.386615 |
Target: 5'- uCGCCGcgGUCCGGUucaggaucaUGGCGGCgcccccucccgccgCGUCCg -3' miRNA: 3'- -GCGGCuuUAGGCCA---------GCCGCCG--------------GCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 81367 | 0.76 | 0.388959 |
Target: 5'- gGCCGggG-CgGG-CGGCGGCCG-CCu -3' miRNA: 3'- gCGGCuuUaGgCCaGCCGCCGGCaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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