miRNA display CGI


Results 1 - 20 of 439 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 3' -59.2 NC_002512.2 + 138 0.67 0.84383
Target:  5'- aCGCCGggGagCCGGgCGGgGcGCCGg-- -3'
miRNA:   3'- -GCGGCuuUa-GGCCaGCCgC-CGGCagg -5'
8998 3' -59.2 NC_002512.2 + 1311 0.69 0.733918
Target:  5'- cCGCCGAcacGAcCgCGGUaaggaagcgucCGGCuGCCGUCCg -3'
miRNA:   3'- -GCGGCU---UUaG-GCCA-----------GCCGcCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 1859 0.73 0.517005
Target:  5'- uCGCCGccGUCCGGUCGccccucgucccGCGucCCGUCCg -3'
miRNA:   3'- -GCGGCuuUAGGCCAGC-----------CGCc-GGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 1965 0.73 0.507893
Target:  5'- cCGCCGGcg-UCGGa-GGCGGCgCGUCCg -3'
miRNA:   3'- -GCGGCUuuaGGCCagCCGCCG-GCAGG- -5'
8998 3' -59.2 NC_002512.2 + 2199 0.66 0.892228
Target:  5'- cCGCCGucgucGUCuCGGUCGcCGGCgGcgCCg -3'
miRNA:   3'- -GCGGCuu---UAG-GCCAGCcGCCGgCa-GG- -5'
8998 3' -59.2 NC_002512.2 + 2792 0.7 0.687281
Target:  5'- aGcCCGAc--CCGGcCGGCGGCCGgcgggacCCg -3'
miRNA:   3'- gC-GGCUuuaGGCCaGCCGCCGGCa------GG- -5'
8998 3' -59.2 NC_002512.2 + 3147 0.69 0.743952
Target:  5'- gGCCGGAGcCCGGUCccgccgucgucgcccGCGGCC-UCCc -3'
miRNA:   3'- gCGGCUUUaGGCCAGc--------------CGCCGGcAGG- -5'
8998 3' -59.2 NC_002512.2 + 3845 0.66 0.898374
Target:  5'- gGCCGAGGUCgCaGUCGuagacggaGCGGacguCGUCCu -3'
miRNA:   3'- gCGGCUUUAG-GcCAGC--------CGCCg---GCAGG- -5'
8998 3' -59.2 NC_002512.2 + 4201 0.68 0.78725
Target:  5'- aCGCCGGAGaUCGGUgGgaGCGGCCG-Cg -3'
miRNA:   3'- -GCGGCUUUaGGCCAgC--CGCCGGCaGg -5'
8998 3' -59.2 NC_002512.2 + 5167 0.71 0.630068
Target:  5'- gGCgCGA---CCGGggCGGCGGCCGgccCCa -3'
miRNA:   3'- gCG-GCUuuaGGCCa-GCCGCCGGCa--GG- -5'
8998 3' -59.2 NC_002512.2 + 5813 0.66 0.898374
Target:  5'- cCGCCGcc--CCGuUCGGCGG-CGUCg -3'
miRNA:   3'- -GCGGCuuuaGGCcAGCCGCCgGCAGg -5'
8998 3' -59.2 NC_002512.2 + 6097 0.66 0.904319
Target:  5'- cCGCCGAcGUCCc--CGGCGa-CGUCCg -3'
miRNA:   3'- -GCGGCUuUAGGccaGCCGCcgGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 6415 0.7 0.696718
Target:  5'- gCGgCGGcg-CUGGggaaGGCGGCCGUCUg -3'
miRNA:   3'- -GCgGCUuuaGGCCag--CCGCCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 6448 0.68 0.80413
Target:  5'- gCGCCGAGA-CaggGGUCGGCcGGCacgGUCa -3'
miRNA:   3'- -GCGGCUUUaGg--CCAGCCG-CCGg--CAGg -5'
8998 3' -59.2 NC_002512.2 + 6675 0.75 0.436913
Target:  5'- gGCCGGGAcgcgcUCCGGgacgccguccccgUCgGGCGGCCcGUCCa -3'
miRNA:   3'- gCGGCUUU-----AGGCC-------------AG-CCGCCGG-CAGG- -5'
8998 3' -59.2 NC_002512.2 + 7570 0.68 0.828412
Target:  5'- cCGCCGcAGccUCCGGUaccgccucCGGCGGCagcgGUCg -3'
miRNA:   3'- -GCGGCuUU--AGGCCA--------GCCGCCGg---CAGg -5'
8998 3' -59.2 NC_002512.2 + 8195 0.68 0.820465
Target:  5'- gGCCGAGcgUCGccgGGCGGgUGUCCg -3'
miRNA:   3'- gCGGCUUuaGGCcagCCGCCgGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 8457 0.8 0.231883
Target:  5'- gGCCGcgGUCCGcaUGGCGGCCGUCg -3'
miRNA:   3'- gCGGCuuUAGGCcaGCCGCCGGCAGg -5'
8998 3' -59.2 NC_002512.2 + 9453 0.68 0.81237
Target:  5'- aCGuaGAGcUCCGG-CGGCuGGCCGUa- -3'
miRNA:   3'- -GCggCUUuAGGCCaGCCG-CCGGCAgg -5'
8998 3' -59.2 NC_002512.2 + 10471 0.66 0.897161
Target:  5'- cCGCCGcc--CCGGgcgugggcgucgCGGCGGgCCGaCCa -3'
miRNA:   3'- -GCGGCuuuaGGCCa-----------GCCGCC-GGCaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.