miRNA display CGI


Results 41 - 60 of 439 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 3' -59.2 NC_002512.2 + 216329 0.66 0.898374
Target:  5'- gGCCccGAcgCGGUCGGCGGCuCGaUCUu -3'
miRNA:   3'- gCGGcuUUagGCCAGCCGCCG-GC-AGG- -5'
8998 3' -59.2 NC_002512.2 + 5813 0.66 0.898374
Target:  5'- cCGCCGcc--CCGuUCGGCGG-CGUCg -3'
miRNA:   3'- -GCGGCuuuaGGCcAGCCGCCgGCAGg -5'
8998 3' -59.2 NC_002512.2 + 3845 0.66 0.898374
Target:  5'- gGCCGAGGUCgCaGUCGuagacggaGCGGacguCGUCCu -3'
miRNA:   3'- gCGGCUUUAG-GcCAGC--------CGCCg---GCAGG- -5'
8998 3' -59.2 NC_002512.2 + 29909 0.66 0.898374
Target:  5'- cCGCCGGGcgCgCGGacgCGGCGGgaGUgCa -3'
miRNA:   3'- -GCGGCUUuaG-GCCa--GCCGCCggCAgG- -5'
8998 3' -59.2 NC_002512.2 + 219667 0.66 0.898374
Target:  5'- cCGUCGGGAUCUG---GGCGcGCCGcCCg -3'
miRNA:   3'- -GCGGCUUUAGGCcagCCGC-CGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 172842 0.66 0.898374
Target:  5'- gCGCCcc---CCGGUCGucggacGCGGCC-UCCg -3'
miRNA:   3'- -GCGGcuuuaGGCCAGC------CGCCGGcAGG- -5'
8998 3' -59.2 NC_002512.2 + 116975 0.66 0.898374
Target:  5'- cCGCCGAcgccccGUCCGGgCGGgccgaCGGCCG-Ca -3'
miRNA:   3'- -GCGGCUu-----UAGGCCaGCC-----GCCGGCaGg -5'
8998 3' -59.2 NC_002512.2 + 22072 0.66 0.898374
Target:  5'- aCGCCG-AGUCgGGguUCGGaGaGCuCGUCCg -3'
miRNA:   3'- -GCGGCuUUAGgCC--AGCCgC-CG-GCAGG- -5'
8998 3' -59.2 NC_002512.2 + 104993 0.66 0.897769
Target:  5'- aCGCCGAa---CGGUCGccgugacGgGGCCG-CCg -3'
miRNA:   3'- -GCGGCUuuagGCCAGC-------CgCCGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 10471 0.66 0.897161
Target:  5'- cCGCCGcc--CCGGgcgugggcgucgCGGCGGgCCGaCCa -3'
miRNA:   3'- -GCGGCuuuaGGCCa-----------GCCGCC-GGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 219514 0.66 0.896552
Target:  5'- gGCCGgcGUUCGGcacccccgucuucgUCGGCGuGCCcaCCg -3'
miRNA:   3'- gCGGCuuUAGGCC--------------AGCCGC-CGGcaGG- -5'
8998 3' -59.2 NC_002512.2 + 97963 0.66 0.894711
Target:  5'- cCGCCGGucUCCGGUUccuuuaaugcgcacgGGCGaCCGaCCc -3'
miRNA:   3'- -GCGGCUuuAGGCCAG---------------CCGCcGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 196745 0.66 0.892228
Target:  5'- -uCCG-AGUCCGuGUCaGGCG-CCGUCUg -3'
miRNA:   3'- gcGGCuUUAGGC-CAG-CCGCcGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 100052 0.66 0.892228
Target:  5'- gCGCUGAGAcgCGGgggCGGCGGCg--CCg -3'
miRNA:   3'- -GCGGCUUUagGCCa--GCCGCCGgcaGG- -5'
8998 3' -59.2 NC_002512.2 + 113318 0.66 0.892228
Target:  5'- gGCCaGGAGgggCUcGUCgcacaGGCGGCCGUUCa -3'
miRNA:   3'- gCGG-CUUUa--GGcCAG-----CCGCCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 31711 0.66 0.892228
Target:  5'- uCGCCGAcgugGAgguccgCCGGcCGGCG-CCGaCCc -3'
miRNA:   3'- -GCGGCU----UUa-----GGCCaGCCGCcGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 218561 0.66 0.892228
Target:  5'- cCGCCGgcGUCC-GUCGcGuCGGCCaUCUc -3'
miRNA:   3'- -GCGGCuuUAGGcCAGC-C-GCCGGcAGG- -5'
8998 3' -59.2 NC_002512.2 + 146085 0.66 0.892228
Target:  5'- cCGCCGGcgcgcccgacgcGGUCCucGGcggCGGCGGCgGcgCCg -3'
miRNA:   3'- -GCGGCU------------UUAGG--CCa--GCCGCCGgCa-GG- -5'
8998 3' -59.2 NC_002512.2 + 2199 0.66 0.892228
Target:  5'- cCGCCGucgucGUCuCGGUCGcCGGCgGcgCCg -3'
miRNA:   3'- -GCGGCuu---UAG-GCCAGCcGCCGgCa-GG- -5'
8998 3' -59.2 NC_002512.2 + 24219 0.66 0.892228
Target:  5'- aCGCCGGAgcuGUCCGaggcGUCGGgcccgccgaCGG-CGUCCc -3'
miRNA:   3'- -GCGGCUU---UAGGC----CAGCC---------GCCgGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.