miRNA display CGI


Results 21 - 40 of 439 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 3' -59.2 NC_002512.2 + 12072 0.7 0.715442
Target:  5'- cCGCCGucgacGAUCgGGaCGGCGacGCCGaUCCg -3'
miRNA:   3'- -GCGGCu----UUAGgCCaGCCGC--CGGC-AGG- -5'
8998 3' -59.2 NC_002512.2 + 12589 0.66 0.910058
Target:  5'- aGCCGAucAUCUcc-CGGCGcGCgGUCCg -3'
miRNA:   3'- gCGGCUu-UAGGccaGCCGC-CGgCAGG- -5'
8998 3' -59.2 NC_002512.2 + 13562 0.67 0.872606
Target:  5'- cCGCCGA---CCGcGUCGG-GGCCG-Ca -3'
miRNA:   3'- -GCGGCUuuaGGC-CAGCCgCCGGCaGg -5'
8998 3' -59.2 NC_002512.2 + 14550 0.71 0.620498
Target:  5'- aGCCGGgcacGAUCCGGUCgaGGaaGCCGgugCCg -3'
miRNA:   3'- gCGGCU----UUAGGCCAG--CCgcCGGCa--GG- -5'
8998 3' -59.2 NC_002512.2 + 14775 0.67 0.870548
Target:  5'- gGCCGu--UCUGG-CGGuCGGCCGcggcggcgacgaagUCCu -3'
miRNA:   3'- gCGGCuuuAGGCCaGCC-GCCGGC--------------AGG- -5'
8998 3' -59.2 NC_002512.2 + 15228 0.73 0.54192
Target:  5'- uCGCCGAGGcgCCGGgaggagagacugcgaGGCGGCCcgcGUCCc -3'
miRNA:   3'- -GCGGCUUUa-GGCCag-------------CCGCCGG---CAGG- -5'
8998 3' -59.2 NC_002512.2 + 15562 0.67 0.836202
Target:  5'- gGCCGGAGUCguCGGccugcUCGuGCGGCaCG-CCg -3'
miRNA:   3'- gCGGCUUUAG--GCC-----AGC-CGCCG-GCaGG- -5'
8998 3' -59.2 NC_002512.2 + 16658 0.67 0.836202
Target:  5'- gGCCGGcg-CC-GUUGGCGGCCacgacccggcgGUCCc -3'
miRNA:   3'- gCGGCUuuaGGcCAGCCGCCGG-----------CAGG- -5'
8998 3' -59.2 NC_002512.2 + 16995 0.69 0.761034
Target:  5'- gCGCCGAc--UCGGUCcauGGCcGCCGUCUc -3'
miRNA:   3'- -GCGGCUuuaGGCCAG---CCGcCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 19357 0.72 0.610936
Target:  5'- uGCCGGAccGUCgGGggcUCGGCGGCC-UCg -3'
miRNA:   3'- gCGGCUU--UAGgCC---AGCCGCCGGcAGg -5'
8998 3' -59.2 NC_002512.2 + 20123 0.69 0.752085
Target:  5'- uGCCGAAAgacgCGGagcgCGaCGGCUGUCCg -3'
miRNA:   3'- gCGGCUUUag--GCCa---GCcGCCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 20845 0.71 0.639639
Target:  5'- cCGUCGGAAucgcUCCGGgacGCGGCCGcCCc -3'
miRNA:   3'- -GCGGCUUU----AGGCCagcCGCCGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 21155 0.73 0.53542
Target:  5'- uGCC----UCCGGUCGGCGGCgcUCCc -3'
miRNA:   3'- gCGGcuuuAGGCCAGCCGCCGgcAGG- -5'
8998 3' -59.2 NC_002512.2 + 21175 0.7 0.687281
Target:  5'- -nCCGA--UCUGGUCGGCGaGCCccggguacccGUCCa -3'
miRNA:   3'- gcGGCUuuAGGCCAGCCGC-CGG----------CAGG- -5'
8998 3' -59.2 NC_002512.2 + 21442 0.67 0.872606
Target:  5'- -cCCGAcGUCCGacucgaUCGGgGGCCGgcgCCg -3'
miRNA:   3'- gcGGCUuUAGGCc-----AGCCgCCGGCa--GG- -5'
8998 3' -59.2 NC_002512.2 + 22072 0.66 0.898374
Target:  5'- aCGCCG-AGUCgGGguUCGGaGaGCuCGUCCg -3'
miRNA:   3'- -GCGGCuUUAGgCC--AGCCgC-CG-GCAGG- -5'
8998 3' -59.2 NC_002512.2 + 24219 0.66 0.892228
Target:  5'- aCGCCGGAgcuGUCCGaggcGUCGGgcccgccgaCGG-CGUCCc -3'
miRNA:   3'- -GCGGCUU---UAGGC----CAGCC---------GCCgGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 24845 0.71 0.668294
Target:  5'- gGCCcgcggCCGGUCGGCGGCgGa-- -3'
miRNA:   3'- gCGGcuuuaGGCCAGCCGCCGgCagg -5'
8998 3' -59.2 NC_002512.2 + 25707 0.68 0.828412
Target:  5'- aGCCGAAgccGUCCGcGaUCuuGCuGCCGUCCu -3'
miRNA:   3'- gCGGCUU---UAGGC-C-AGc-CGcCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 27394 0.69 0.769882
Target:  5'- cCGCCGAAcugCUGaGUCGGCagaucgccGCCGUCg -3'
miRNA:   3'- -GCGGCUUua-GGC-CAGCCGc-------CGGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.