miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 5' -53.6 NC_002512.2 + 226902 0.69 0.957995
Target:  5'- aGAGcACCUCgGAGaGACGACg---GCGa -3'
miRNA:   3'- gCUC-UGGAGgCUC-CUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 211939 0.69 0.961496
Target:  5'- aCGGGACgUCCGuGGACGAgaggguCggCUGCu -3'
miRNA:   3'- -GCUCUGgAGGCuCCUGCU------GaaGAUGc -5'
8998 5' -53.6 NC_002512.2 + 133841 0.68 0.964791
Target:  5'- gGAGGCCUcuccggaggacaCCGAGGACGucCUgggGCGg -3'
miRNA:   3'- gCUCUGGA------------GGCUCCUGCu-GAagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 121559 0.68 0.970775
Target:  5'- aCGAGACgcUgGAGGACGugUUCU-CGu -3'
miRNA:   3'- -GCUCUGgaGgCUCCUGCugAAGAuGC- -5'
8998 5' -53.6 NC_002512.2 + 41113 0.68 0.970775
Target:  5'- aCGAGAUCUgaGAGGuuGGCUUCgaugGCa -3'
miRNA:   3'- -GCUCUGGAggCUCCugCUGAAGa---UGc -5'
8998 5' -53.6 NC_002512.2 + 150039 0.68 0.970775
Target:  5'- aCGAGGgggCCGGGGACGACggg-GCGg -3'
miRNA:   3'- -GCUCUggaGGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 209271 0.68 0.970775
Target:  5'- -cGGACCUCCuucGAGGACGuggagcgCUGCGu -3'
miRNA:   3'- gcUCUGGAGG---CUCCUGCugaa---GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 22593 0.68 0.971879
Target:  5'- gGAGGCCacggugcuggacacgUCCGGGGagugcaugcGCGAgaUCUGCGa -3'
miRNA:   3'- gCUCUGG---------------AGGCUCC---------UGCUgaAGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 155305 0.68 0.973477
Target:  5'- cCGuGACCauggCCGAGGACGAUcUCg--- -3'
miRNA:   3'- -GCuCUGGa---GGCUCCUGCUGaAGaugc -5'
8998 5' -53.6 NC_002512.2 + 36588 0.68 0.973477
Target:  5'- gGAGACCUCC-AGGAgaGCcugCUGCGa -3'
miRNA:   3'- gCUCUGGAGGcUCCUgcUGaa-GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 223782 0.68 0.973477
Target:  5'- aGGGACCggacgucgCCGGGGACGuCggCgGCGa -3'
miRNA:   3'- gCUCUGGa-------GGCUCCUGCuGaaGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 228048 0.68 0.975993
Target:  5'- gCGAGACgC-CCGcGGACGGCUgcgGCGc -3'
miRNA:   3'- -GCUCUG-GaGGCuCCUGCUGAagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 213559 0.67 0.97833
Target:  5'- gCGGGguccGCCUCgaGAGGAgGACUUgaGCGa -3'
miRNA:   3'- -GCUC----UGGAGg-CUCCUgCUGAAgaUGC- -5'
8998 5' -53.6 NC_002512.2 + 161841 0.67 0.97833
Target:  5'- aCGAGGCUUCCGGacACGGCgUCgGCGg -3'
miRNA:   3'- -GCUCUGGAGGCUccUGCUGaAGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 90500 0.67 0.97833
Target:  5'- aCGGGAUCggggCCGAGGcCGGCggCggACGa -3'
miRNA:   3'- -GCUCUGGa---GGCUCCuGCUGaaGa-UGC- -5'
8998 5' -53.6 NC_002512.2 + 138054 0.67 0.97833
Target:  5'- gCGGGACCggaUCCGGGuGACGAacacgagaCUgCUGCGu -3'
miRNA:   3'- -GCUCUGG---AGGCUC-CUGCU--------GAaGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 164165 0.67 0.980285
Target:  5'- uCGAGGacaccccgcccuaUCUCCGGGGccucgACGACUUCaUGCa -3'
miRNA:   3'- -GCUCU-------------GGAGGCUCC-----UGCUGAAG-AUGc -5'
8998 5' -53.6 NC_002512.2 + 212536 0.67 0.980494
Target:  5'- uCGGGAUCgucgaCGGGGACGACgaugACGa -3'
miRNA:   3'- -GCUCUGGag---GCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 145255 0.67 0.980494
Target:  5'- -uGGGCCgCCGccuGGACGACgaccugCUGCGg -3'
miRNA:   3'- gcUCUGGaGGCu--CCUGCUGaa----GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 49222 0.67 0.980494
Target:  5'- uGAGAUCUUCGGGGccaccGCGGCggcCUGCc -3'
miRNA:   3'- gCUCUGGAGGCUCC-----UGCUGaa-GAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.