miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 5' -53.6 NC_002512.2 + 178235 0.74 0.791413
Target:  5'- aGGG-UCUCCGGGGACGGCgcggUCUcCGg -3'
miRNA:   3'- gCUCuGGAGGCUCCUGCUGa---AGAuGC- -5'
8998 5' -53.6 NC_002512.2 + 17902 0.73 0.817333
Target:  5'- gCGGcGGCC-CCGAGGACGACggCcGCGu -3'
miRNA:   3'- -GCU-CUGGaGGCUCCUGCUGaaGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 167498 0.72 0.84182
Target:  5'- aCGAGGCCgugUCCGAGGGCGcCa--UGCGg -3'
miRNA:   3'- -GCUCUGG---AGGCUCCUGCuGaagAUGC- -5'
8998 5' -53.6 NC_002512.2 + 209630 0.72 0.84182
Target:  5'- --cGGCCggaCGAGGACGACgacggCUGCGg -3'
miRNA:   3'- gcuCUGGag-GCUCCUGCUGaa---GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 156448 0.72 0.84963
Target:  5'- gGGGGgCUCCGGGGGCGGCgggggacUCggggGCGg -3'
miRNA:   3'- gCUCUgGAGGCUCCUGCUGa------AGa---UGC- -5'
8998 5' -53.6 NC_002512.2 + 122900 0.72 0.864683
Target:  5'- gGAGACga-CGAGGACGACggcaUCUACu -3'
miRNA:   3'- gCUCUGgagGCUCCUGCUGa---AGAUGc -5'
8998 5' -53.6 NC_002512.2 + 128206 0.72 0.871914
Target:  5'- gCGGGACCggggaCGGGGACGACUgUCUcCa -3'
miRNA:   3'- -GCUCUGGag---GCUCCUGCUGA-AGAuGc -5'
8998 5' -53.6 NC_002512.2 + 9025 0.71 0.892368
Target:  5'- cCGAGGCC-CCGcGGACGACguagACGc -3'
miRNA:   3'- -GCUCUGGaGGCuCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 157262 0.71 0.898758
Target:  5'- --cGACCggCGAGGACGugUUCgugGCGc -3'
miRNA:   3'- gcuCUGGagGCUCCUGCugAAGa--UGC- -5'
8998 5' -53.6 NC_002512.2 + 99920 0.71 0.898758
Target:  5'- gGGGGCCcgCCGaAGGGCGGCgucggCUGCu -3'
miRNA:   3'- gCUCUGGa-GGC-UCCUGCUGaa---GAUGc -5'
8998 5' -53.6 NC_002512.2 + 101801 0.71 0.910877
Target:  5'- gGAGcGCUUCCGAGGA-GGCUUCcuggGCGc -3'
miRNA:   3'- gCUC-UGGAGGCUCCUgCUGAAGa---UGC- -5'
8998 5' -53.6 NC_002512.2 + 36226 0.71 0.910877
Target:  5'- gGAGACggucCCGAGGACGACg---GCGa -3'
miRNA:   3'- gCUCUGga--GGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 81824 0.7 0.916602
Target:  5'- gCGAGGUCUCCGAgaGGACGACg---ACGa -3'
miRNA:   3'- -GCUCUGGAGGCU--CCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 127534 0.7 0.922101
Target:  5'- cCGAGACUgcaggCCGAGGACGcGCUUgU-CGu -3'
miRNA:   3'- -GCUCUGGa----GGCUCCUGC-UGAAgAuGC- -5'
8998 5' -53.6 NC_002512.2 + 108592 0.7 0.932419
Target:  5'- gGGGGCC-CCGGGGAgCGGCggCcGCGg -3'
miRNA:   3'- gCUCUGGaGGCUCCU-GCUGaaGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 58012 0.7 0.932419
Target:  5'- gGGGACg-CCGAGGACGGCgUUCcGCc -3'
miRNA:   3'- gCUCUGgaGGCUCCUGCUG-AAGaUGc -5'
8998 5' -53.6 NC_002512.2 + 87834 0.69 0.944482
Target:  5'- aGGGGCCgaggcgaaaugcgCCGAGG-CGAgCUUCUugGu -3'
miRNA:   3'- gCUCUGGa------------GGCUCCuGCU-GAAGAugC- -5'
8998 5' -53.6 NC_002512.2 + 166442 0.69 0.950352
Target:  5'- cCGu--CCUCCGGGGGCGACg---GCGc -3'
miRNA:   3'- -GCucuGGAGGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 15106 0.69 0.954281
Target:  5'- gGGGACC-CgGAGGGCGACcggcgccggaCUGCGa -3'
miRNA:   3'- gCUCUGGaGgCUCCUGCUGaa--------GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 193399 0.69 0.957995
Target:  5'- cCGAGugUUUcuucaucgaCGAGGACGACgacgaCUACGa -3'
miRNA:   3'- -GCUCugGAG---------GCUCCUGCUGaa---GAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.