Results 1 - 20 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 184709 | 1.08 | 0.010111 |
Target: 5'- uCGAGACCUCCGAGGACGACUUCUACGc -3' miRNA: 3'- -GCUCUGGAGGCUCCUGCUGAAGAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 224043 | 0.86 | 0.225276 |
Target: 5'- aCGGGGCCgCCGGGGACGACUcgucgggcgUCUGCGa -3' miRNA: 3'- -GCUCUGGaGGCUCCUGCUGA---------AGAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 226004 | 0.8 | 0.455196 |
Target: 5'- cCGGGACgccggugcugaCUCCGAGGACGACguccgcuccgUCUACGa -3' miRNA: 3'- -GCUCUG-----------GAGGCUCCUGCUGa---------AGAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 130257 | 0.8 | 0.455196 |
Target: 5'- cCGGGcCCUCCGAGGGCGACgaCcGCGa -3' miRNA: 3'- -GCUCuGGAGGCUCCUGCUGaaGaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 212962 | 0.77 | 0.598192 |
Target: 5'- aCGGcGCCUCCGGGGuCGAgaUCUGCGa -3' miRNA: 3'- -GCUcUGGAGGCUCCuGCUgaAGAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 128569 | 0.77 | 0.608127 |
Target: 5'- uCGAcGGCCUCCGGGGGcCGACc-CUGCGa -3' miRNA: 3'- -GCU-CUGGAGGCUCCU-GCUGaaGAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 49462 | 0.77 | 0.638006 |
Target: 5'- cCGGGgcGCCgucaCCGAGGACGACUUCgacUACGc -3' miRNA: 3'- -GCUC--UGGa---GGCUCCUGCUGAAG---AUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 130664 | 0.76 | 0.677746 |
Target: 5'- gCGGGGCuCUCCGAGGACcggGACgggCUGCu -3' miRNA: 3'- -GCUCUG-GAGGCUCCUG---CUGaa-GAUGc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 221862 | 0.76 | 0.677746 |
Target: 5'- cCGGGACCUCuCGgagcggguGGGGCGAgUUCUGCu -3' miRNA: 3'- -GCUCUGGAG-GC--------UCCUGCUgAAGAUGc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 97127 | 0.75 | 0.697435 |
Target: 5'- gGAGACCUUCGcccgccugcGGGACGACgccgcgCUGCGc -3' miRNA: 3'- gCUCUGGAGGC---------UCCUGCUGaa----GAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 225542 | 0.75 | 0.707206 |
Target: 5'- gCGGGAgCgCgGAGGACGACUUCUucgGCGa -3' miRNA: 3'- -GCUCUgGaGgCUCCUGCUGAAGA---UGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 130978 | 0.75 | 0.707206 |
Target: 5'- gGAGACCUCgGAGGAgGAgaUCggGCGa -3' miRNA: 3'- gCUCUGGAGgCUCCUgCUgaAGa-UGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 201864 | 0.75 | 0.716916 |
Target: 5'- uGGGGCCugcggUCCGAGGACGGCg---GCGg -3' miRNA: 3'- gCUCUGG-----AGGCUCCUGCUGaagaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 11308 | 0.75 | 0.716916 |
Target: 5'- gGAGACCUCCGAGaGAUGGCcgaCgcgACGg -3' miRNA: 3'- gCUCUGGAGGCUC-CUGCUGaa-Ga--UGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 138431 | 0.75 | 0.726558 |
Target: 5'- --uGACCUUCGAGGugGAacaCUUCUGCc -3' miRNA: 3'- gcuCUGGAGGCUCCugCU---GAAGAUGc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 11476 | 0.75 | 0.745601 |
Target: 5'- gGAGACCg-CGAGGACGACgacgACGg -3' miRNA: 3'- gCUCUGGagGCUCCUGCUGaagaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 183714 | 0.75 | 0.745601 |
Target: 5'- gGAGACCUCCGAGGAgaucCG-CUUCg--- -3' miRNA: 3'- gCUCUGGAGGCUCCU----GCuGAAGaugc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 129088 | 0.74 | 0.754986 |
Target: 5'- --cGACC-CCGAGGACGgGCggcgUCUGCGg -3' miRNA: 3'- gcuCUGGaGGCUCCUGC-UGa---AGAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 156836 | 0.74 | 0.773439 |
Target: 5'- gCGAGGCCUgCGGGGGCcGCUgCUGCc -3' miRNA: 3'- -GCUCUGGAgGCUCCUGcUGAaGAUGc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 207873 | 0.74 | 0.773439 |
Target: 5'- gCGAG---UCCGGGGACGGCUUCUgGCGc -3' miRNA: 3'- -GCUCuggAGGCUCCUGCUGAAGA-UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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