miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 5' -53.6 NC_002512.2 + 4611 0.66 0.98898
Target:  5'- gCGAGACggacgCCGAGGACGcCcUCcugGCGg -3'
miRNA:   3'- -GCUCUGga---GGCUCCUGCuGaAGa--UGC- -5'
8998 5' -53.6 NC_002512.2 + 9025 0.71 0.892368
Target:  5'- cCGAGGCC-CCGcGGACGACguagACGc -3'
miRNA:   3'- -GCUCUGGaGGCuCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 11308 0.75 0.716916
Target:  5'- gGAGACCUCCGAGaGAUGGCcgaCgcgACGg -3'
miRNA:   3'- gCUCUGGAGGCUC-CUGCUGaa-Ga--UGC- -5'
8998 5' -53.6 NC_002512.2 + 11476 0.75 0.745601
Target:  5'- gGAGACCg-CGAGGACGACgacgACGg -3'
miRNA:   3'- gCUCUGGagGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 11741 0.66 0.992576
Target:  5'- aCGAGGCCgggagcgacgacgaCGAcGACGugUUCUACc -3'
miRNA:   3'- -GCUCUGGag------------GCUcCUGCugAAGAUGc -5'
8998 5' -53.6 NC_002512.2 + 12384 0.66 0.991426
Target:  5'- cCGAGcucGCCUUCGGGcGGCGGCg---GCGg -3'
miRNA:   3'- -GCUC---UGGAGGCUC-CUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 13237 0.66 0.991426
Target:  5'- --cGugCUgCG-GGACGACUUCcGCGu -3'
miRNA:   3'- gcuCugGAgGCuCCUGCUGAAGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 15106 0.69 0.954281
Target:  5'- gGGGACC-CgGAGGGCGACcggcgccggaCUGCGa -3'
miRNA:   3'- gCUCUGGaGgCUCCUGCUGaa--------GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 17902 0.73 0.817333
Target:  5'- gCGGcGGCC-CCGAGGACGACggCcGCGu -3'
miRNA:   3'- -GCU-CUGGaGGCUCCUGCUGaaGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 22593 0.68 0.971879
Target:  5'- gGAGGCCacggugcuggacacgUCCGGGGagugcaugcGCGAgaUCUGCGa -3'
miRNA:   3'- gCUCUGG---------------AGGCUCC---------UGCUgaAGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 36226 0.71 0.910877
Target:  5'- gGAGACggucCCGAGGACGACg---GCGa -3'
miRNA:   3'- gCUCUGga--GGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 36588 0.68 0.973477
Target:  5'- gGAGACCUCC-AGGAgaGCcugCUGCGa -3'
miRNA:   3'- gCUCUGGAGGcUCCUgcUGaa-GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 41113 0.68 0.970775
Target:  5'- aCGAGAUCUgaGAGGuuGGCUUCgaugGCa -3'
miRNA:   3'- -GCUCUGGAggCUCCugCUGAAGa---UGc -5'
8998 5' -53.6 NC_002512.2 + 46791 0.66 0.98757
Target:  5'- uCGaAGACCUCCGucugaaGACGACgUCggACGa -3'
miRNA:   3'- -GC-UCUGGAGGCuc----CUGCUGaAGa-UGC- -5'
8998 5' -53.6 NC_002512.2 + 47891 0.66 0.990263
Target:  5'- --uGACC-CCGAGGACGcCgccacCUACGu -3'
miRNA:   3'- gcuCUGGaGGCUCCUGCuGaa---GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 49222 0.67 0.980494
Target:  5'- uGAGAUCUUCGGGGccaccGCGGCggcCUGCc -3'
miRNA:   3'- gCUCUGGAGGCUCC-----UGCUGaa-GAUGc -5'
8998 5' -53.6 NC_002512.2 + 49462 0.77 0.638006
Target:  5'- cCGGGgcGCCgucaCCGAGGACGACUUCgacUACGc -3'
miRNA:   3'- -GCUC--UGGa---GGCUCCUGCUGAAG---AUGC- -5'
8998 5' -53.6 NC_002512.2 + 58012 0.7 0.932419
Target:  5'- gGGGACg-CCGAGGACGGCgUUCcGCc -3'
miRNA:   3'- gCUCUGgaGGCUCCUGCUG-AAGaUGc -5'
8998 5' -53.6 NC_002512.2 + 81824 0.7 0.916602
Target:  5'- gCGAGGUCUCCGAgaGGACGACg---ACGa -3'
miRNA:   3'- -GCUCUGGAGGCU--CCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 87834 0.69 0.944482
Target:  5'- aGGGGCCgaggcgaaaugcgCCGAGG-CGAgCUUCUugGu -3'
miRNA:   3'- gCUCUGGa------------GGCUCCuGCU-GAAGAugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.